Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgagggttgagttttttatttttattttttatttatgggatgggtgtcgctttattgctggagcgcgctgtccactttgctcacggaatcgatagctgataaaaggttctacttgatggtcttatcag

Basic information

species Physcomitrella patens
transcript PP1S17_306V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 2
CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgagggttgagttttttatttttattttttatttatgggatgggtgtcgctttattgctg-gagcgcgctgtccactttgctcacggaatcgatagctgataaaaggttctacttgatggtcttatcag
 |||||  | |||||||||||||||||||||||||| ||       ||||    |  |    | || |||||||| ||  |||| ||   |||||| ||||||| |||    |  ||  || || ||     || | ||     |   ||| |  ||   |||  | |   |||| | |      ||  |  | |||  |    ||                           
TCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAAGACCCTCGTGTCCAGGACACAGGGTACAAAGgtat-gagcaccgc-ttccttgttcttggccgttgtata---attctctgttgtgtttgcgctaagtgtttgctgcctaaccc-ttcctgtgaacgaagggatcta---------------------------

upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 2
CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGC-TTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgagggttgagttttttatttttattttttatttatgggatgggtgtcgctttat-tgctggagcgcgc-tgtccactttgctcacggaatcgatagctgataaaaggttctacttgatggtcttatcag
 |||||||| ||||||||||||||||| |||||||| ||      ||||| |     |   | |||||||||| || ||  |||| ||   |||||||| |||||    ||||   |||     |     ||||||  ||          ||    |  | ||  |  | |||  |     || ||   | | |  |    |  |                              
TCCCTTCTCTAAGAAGGACTGGTATGACATCAAGGCCCCATCGGTCTTCA-GTGTGCGCAACATTGGGAAGACTCTCGTGTCCAGGACACAGGGTACCAGGgtat----ggttttctttaaatctcgaggtttttacgtaccacccctacgttttgtggtgtgaagatgggcgtataggttctatgtctatgtagaccgccgtag------------------------------

upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G703354_T01 (Zea mays), 5'ss of exon 2
CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGC-TTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgagggttgagttttttatttttattttttatttatgggatgggtgtcgc--tttattgctggagcgcgctgtccactttgctcacggaatcgatagctgataaaaggttctacttgatggtcttatcag
 || |||  |||||||||| |||||||||||||||||||      ||||| ||    |   | | || |||||||| ||  |||| ||   ||| ||||||||||          |  |  | ||    || |||   ||| | |  | || |    ||||||   |    |   ||    ||| |   |   | | | |    | ||                           
TCCATTCAGCAAGAAGGACCGGTATGATATCAAGGCTCCGCCAGTCTTCA-GCGTGCGCAACATCGGCAAGACCCTGGTGTCCAGGACACAGGGCACCAAGgtat----------gcctactcttcgctttgtttgggtatcgtactgttgccttcgtttattatggttaagtagtggttgcttagtcgattta-ttgttgaacgttaccga-----------------------

upper sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 5'ss of exon 2
CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGCTTGGG-AAGACCCTTGTCACCAGAACCGCGGGTACCAAGgt-attgagggttgagttttttatttttattttttatttatgggatgggtgtcgctttattgctggagcgcgctgtccactttgctcacggaatcgatagctgataaaaggttctacttgatggtcttatcag
||||||| ||||||||||||||||||| |||||||| || | ||  |||||      |   | |||| |||||||| || ||||| ||   |||||||||||| |  |||||    |            |   | |    | |     |  || |||| |         |  ||    ||                                                      
CCCCTTCGCCAAGAAGGACTGGTATGACATCAAGGCGCCCACCATGTTCAC-TGTCCGCAACGTGGGCAAGACCCTGGTGACCAGGACGCAGGGTACCAAGgtgagcgagggggcggc-----gcccgcaccatctccgcaggccgctgcagttgcttcaccatgatttcctgcaacgcag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376861|gb|DC918774.1|DC918774
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208399084|gb|DC904493.1|DC904493
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208344601|gb|DC909160.1|DC909160
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162268511|gb|FC444384.1|FC444384
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208389506|gb|DC929431.1|DC929431
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|18332464|gb|BJ164477.1|BJ164477
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|18358607|gb|BJ190666.1|BJ190666
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|37821343|gb|BJ579409.1|BJ579409
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|100426483|gb|BY958921.1|BY958921
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|18374279|gb|BJ205857.1|BJ205857
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208400702|gb|DC904880.1|DC904880
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|18351511|gb|BJ183563.1|BJ183563
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|18343480|gb|BJ175518.1|BJ175518
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208399117|gb|DC908226.1|DC908226
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208351416|gb|DC922111.1|DC922111
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162264535|gb|FC440857.1|FC440857
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|67718647|gb|BJ968906.1|BJ968906
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162264534|gb|FC440856.1|FC440856
EST:     CAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTTTTCGAGGTCTCCTTGGCTGAT
genomic: CAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162268510|gb|FC444383.1|FC444383
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208354480|gb|DC953858.1|DC953858
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162279348|gb|FC455271.1|FC455271
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|67727072|gb|BJ977331.1|BJ977331
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162278252|gb|FC454591.1|FC454591
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208361818|gb|DC939040.1|DC939040
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162227858|gb|FC403666.1|FC403666
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208387862|gb|DC929206.1|DC929206
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208349984|gb|DC910219.1|DC910219
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162277304|gb|FC453734.1|FC453734
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|100417991|gb|BY993284.1|BY993284
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|18331779|gb|BJ163790.1|BJ163790
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162227859|gb|FC403667.1|FC403667
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208376911|gb|DC906852.1|DC906852
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208397993|gb|DC920725.1|DC920725
EST:     CGCAGAAGTCGCTTGGGAAGANCCTTGTCACCAGAACCGCGGNTACCAAG                         ATTGCCTCCGACGGNTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208378354|gb|DC923025.1|DC923025
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCNTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|67716290|gb|BJ966550.1|BJ966550
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208377740|gb|DC940852.1|DC940852
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|208396266|gb|DC924060.1|DC924060
EST:     CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
EST: gi|162279347|gb|FC455270.1|FC455270
EST:     CCAGAACCGCGGGTACCAAG                         ATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT
genomic: CCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 31 (downstream exon)
Score: 34

CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgaggg ... gtcttatcagATTGCCTCCGACGGGTTGAAGGGTCGTGTGTTCGAGGTCTCCTTGGCTGATTTGCAGAATGACGAAGATCAGGCTTTCCGCAAGATTAAGCTGAGGGCCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCTTCTCCAAGAAGGACTGGTATGATATCAAGGCTCCTAACACCTTCACGCAGAAGTCGCTTGGGAAGACCCTTGTCACCAGAACCGCGGGTACCAAGgtattgagggttgagttttttatttttattttttatttatgggatgggtgtcgctttattgctggagcgcgctgtccactttgctcacggaatcgatagctgataaaaggttctacttgatggtcttatcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA