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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAACCCTTTAAGATACAAGCTTGGTTTTCCTCTGGTGCTCTTGTGTTGCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcgtatacatgaaatttttttactctttgatgttatatgctagacacgaatttggattggcacaagtttaattattcaatgacacaagtttac...

Basic information

species Physcomitrella patens
transcript PP1S172_91V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67568772|gb|BJ941596.1|BJ941596
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|208344588|gb|DC909147.1|DC909147
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|100402089|gb|BY973211.1|BY973211
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGCCACCAATGAGGAACTTGGGGTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|18368213|gb|BJ200298.1|BJ200298
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|162149918|gb|FC326241.1|FC326241
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|100354693|gb|BY983518.1|BY983518
EST:     CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCNTC-AAG                         GAAGAAAAACATGTGGTGATTGACC
genomic: CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTC-TCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACC
EST: gi|100372203|gb|BY985484.1|BY985484
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|100384950|gb|BY969685.1|BY969685
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|18355511|gb|BJ187570.1|BJ187570
EST:     GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAG                         GAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
genomic: GCACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCTCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACTTGTGTTC
EST: gi|100380014|gb|BY968803.1|BY968803
EST:     CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCCCTCTCCA-G                         AAAGAAAA-CATGTGGTGATTGACCCCGTCACCAATGAGAAACT
genomic: CACATTCTTCTTCTTGGTCGGCTTTTACGGTTCCAATTCCC-TCTCCAAGgtatagttcg ... ttgttttcagGAAGAAAAACATGTGGTGATTGACCCCGTCACCAATGAGAAACT