1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAGATGTGGGAGCTTGGGCCATGAATATTATCAGCTCTGTTGGTATTATCATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttcacgagccacatatggcgatctcgaaccatgctcgtgtttctttcgccgtttgttacctacgattcagttgcaaaccctcaggttgacgcagtagggtaatggacctgggatttatagccattggatgttcattgcatgaattccatcttctcttactggctaattcctggatgcag
species | Physcomitrella patens |
transcript | PP1S15_388V6.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGEST: gi|100397537|gb|BY990276.1|BY990276
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGG
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACGEST: gi|100398934|gb|BY990589.1|BY990589
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACGEST: gi|18346553|gb|BJ178598.1|BJ178598
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACGEST: gi|100436924|gb|BY979594.1|BY979594
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACGEST: gi|208391692|gb|DC942282.1|DC942282
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGGTTACEST: gi|100390523|gb|BY952931.1|BY952931
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGG-TTAC
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGAATTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACGEST: gi|162262231|gb|FC437142.1|FC437142
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACGEST: gi|100390179|gb|BY952587.1|BY952587
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
EST: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTG CAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
genomic: CATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttc ... ctggatgcagCAACAACTTTGACGGCGTTCCACTTCGCCGTGACGGCAGGAGTGGGTTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGATGTGGGAGCTTGGGCCATGAATATTATCAGCTCTGTTGGTATTATCATGGCTAATAAACAAGTTATGTCGAAAGGAGGTTACGACTTCAGATTTGgtgaggtttcacgagccacatatggcgatctcgaaccatgctcgtgtttctttcgccgtttgttacctacgattcagttgcaaaccctcaggttgacgcagtagggtaatggacctgggatttatagccattggatgttcattgcatgaattccatcttctcttactggctaattcctggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG