Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgcatctgaatctttcgagttttcgtcgaaagccatgaaagaatctgttcttgtaggctgcgtggagtagcttgtttcgaagttaggatttga...

Basic information

species Physcomitrella patens
transcript PP1S152_141V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 5'ss of exon 2
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgcatctgaatctttcgagttttcgtcgaaagccatgaaagaatctgttcttgtaggctgcgtggagtagcttgtttcgaagttaggatttga----
 ||||| |||||||||||||||||||  || | ||| |||||  |||| ||||| | ||| ||||||||||| |||||||| || || |||||||||||||| | ||  | ||    ||       | |     |   ||  |  | ||   ||||  |||  |  |  | ||   |    | | ||| |   |  ||      
CGTGCGGTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACCCGCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctcccctcc---tccagatgttctcttgtgcccgcggttgatgatggtgttaatgtttgaagtattgatctgtcc-tgtagaaatggaggcttactttt

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 5'ss of exon 2
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgcatctgaatctttcgagttttcgtcgaaagccatgaaagaatctgttcttgtagg-ctgcgtggagtagc--ttgtttcgaagttaggatttga
 |||||||||||||||||| | ||||  || | ||| |||||  |||| ||||| | ||| ||||||||||| |||||||| || || ||||||||||||||| |||| | |     |   | || | | |  |     |  |   |  | |||| |  |  |  |||  |  |    |  | | ||     || |    || 
CGTGCGCTGCTGGGAGTACCGCCAGCAGCCGGCCATCGTCCGCCTCACCCGCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtc-gcttcccttcttcttactagactgtccccctctctcgctcttacta-ctgtgcccgcggatctgtatcaatcgacgatggatttcgccttggttgctg-

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgcatc---tgaatctttcgagttttcgtcgaaagccatgaaagaatctgttcttgtaggctgcgtggagtagcttgtttcgaagttaggatttga
 |||||||||||||||||||||||||  || | ||| |||||  ||||  | || | ||| ||||||||||| |||||||| || || ||||||||||||||     | |  |   ||   | | | |  |||  |   | |  ||    | ||  | | | || |  |||  ||| || | |  ||     ||||    || 
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatgg-atttgtggatagggtgtggtgg--tgcagggattaccgtcatttaggattagtccctgt

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G034794_T02 (Zea mays), 5'ss of exon 2
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgcatctgaatctttcgagttttcgt-cgaaagccatgaaagaatctgttcttgtaggctgcgtggagt-agcttgtttcgaagttaggatttga
 |||||||||||||||||||||||||  || | ||| |||||  ||||  | || |  ||||| |||||||| |||||||| || || ||||||||||||||     | |  | |      ||   ||  ||  ||  | |  |||  |     | | || | ||  | |    ||  |   ||   | ||    |    | 
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACTCGTCCTGACAAGGCGCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatctcctccagtgcagatcccattggcgcgcgcgaactttgacggtgatggat-ttatgggtaggggaaggtcggggggtggtgcagccgcgcaggg-

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G024354_T01 (Zea mays), 5'ss of exon 2
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgcatctgaatctttcgagttttcgtcgaaagccatgaaagaatc-tgttcttgtaggctgcgtggagtagcttgtttcgaagttaggatttga----
 |||||||||||||||||||||||||  ||   ||| |||||  ||||  | || | ||| ||||||||||| || || || || || ||||||||||||||  |  | |        |  ||  ||| || | |   |||  || | | |  |||     |||| || ||||||  |||||   | |  |||||||||||    
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTCCATCGTCCGCCTCACCAGGCCCACCCGCCCCGACAAGGCCCGTCGTCTCGGCTACAAGGCCAAGCAGgtaggtcttctcgcctgccgctct-gttctc-ttgcctgccgcgagatagtgatgtagaaataggttg-gtggag-ggcttgcagccat-ttaggatttgatctg

upper sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttg--catctgaatctttcgagttttcgtcgaa-agccatgaaagaatctgttcttgtaggctgcgtggagtagcttgtttcgaagttaggatttga
 ||  | || ||||||||  | ||||  ||   |||||| ||| |   ||| || |  ||||||||||||||||| || || || || |||||||||||||||   ||   | |||     ||| |  | |   |  || ||   |     |   ||||     | ||    | || |   |  |    |||    |  |   
GGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTCCATTGTTCGTCTTGTTCGTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttcttcttctcttcattttggttatcaatttaataggtttaggtaatgttgttgaatcaagccttatcgattgattgctggttaagcggtgtct---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716632|gb|BJ966892.1|BJ966892
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67723959|gb|BJ974218.1|BJ974218
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|7147834|gb|AW509756.1|AW509756
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|15729871|gb|BI741529.1|BI741529
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|19790006|gb|BQ041638.1|BQ041638
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162249592|gb|FC426784.1|FC426784
EST:     CGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: CGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|6167181|gb|AW145445.1|AW145445
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGCGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67725985|gb|BJ976244.1|BJ976244
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67716681|gb|BJ966941.1|BJ966941
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18337734|gb|BJ169758.1|BJ169758
EST:     ACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGNAGGCAGGAAGAGGCCA
genomic: ACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|19789278|gb|BQ041210.1|BQ041210
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGTTCTTGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|7148070|gb|AW509992.1|AW509992
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162274706|gb|FC450486.1|FC450486
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67702132|gb|BJ962365.1|BJ962365
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18324928|gb|BJ156923.1|BJ156923
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67724568|gb|BJ974827.1|BJ974827
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18326722|gb|BJ158721.1|BJ158721
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208350163|gb|DC926118.1|DC926118
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|19789414|gb|BQ041295.1|BQ041295
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCATGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162265202|gb|FC441289.1|FC441289
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18329917|gb|BJ161923.1|BJ161923
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162204518|gb|FC380810.1|FC380810
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18339110|gb|BJ171136.1|BJ171136
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162262887|gb|FC438773.1|FC438773
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18334710|gb|BJ166727.1|BJ166727
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162274720|gb|FC450487.1|FC450487
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67723877|gb|BJ974136.1|BJ974136
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTGCCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162262914|gb|FC438774.1|FC438774
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67710289|gb|BJ965952.1|BJ965952
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|7147831|gb|AW509753.1|AW509753
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67709674|gb|BJ965490.1|BJ965490
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67723750|gb|BJ974009.1|BJ974009
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67720626|gb|BJ970885.1|BJ970885
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162223158|gb|FC398788.1|FC398788
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67709801|gb|BJ965617.1|BJ965617
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTGCCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162267259|gb|FC442671.1|FC442671
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162204517|gb|FC380809.1|FC380809
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCTTTCCCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67717468|gb|BJ967727.1|BJ967727
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162267258|gb|FC442670.1|FC442670
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208396192|gb|DC923986.1|DC923986
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162207538|gb|FC383783.1|FC383783
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|100398906|gb|BY990575.1|BY990575
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67712861|gb|BJ966310.1|BJ966310
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162223159|gb|FC398789.1|FC398789
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67724214|gb|BJ974473.1|BJ974473
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67709881|gb|BJ965697.1|BJ965697
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|6227523|gb|AW156122.1|AW156122
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|37840911|gb|BJ598919.1|BJ598919
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67720619|gb|BJ970878.1|BJ970878
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67709625|gb|BJ965441.1|BJ965441
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGCGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|18363752|gb|BJ195824.1|BJ195824
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|208353095|gb|DC910146.1|DC910146
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67702125|gb|BJ962358.1|BJ962358
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67725202|gb|BJ975461.1|BJ975461
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|162227057|gb|FC402258.1|FC402258
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|19782582|gb|BQ039872.1|BQ039872
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCATGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|7067172|gb|AW497027.1|AW497027
EST:     CCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: CCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAA-GGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
EST: gi|67725152|gb|BJ975411.1|BJ975411
EST:     GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAG                         GGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA
genomic: GCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 57

TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgc ... tcttgtgtagGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC




<











<


<