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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTTCTTGGAGCGTCGCCTGCAGACTTTGGTGTTCAAGTCTGGTATGGCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatgatattgcggcagcaatcttccacattatctagacatgtgaatcctgttcctgtaattcaaatcagggcttctcaattttcttcaatcagct...

Basic information

species Physcomitrella patens
transcript PP1S14_31V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_31V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDO97033 (Chlamydomonas reinhardtii), 5'ss of exon 3
AGAACTTCTTGGAGCGTCGCCTGCAGACTTTGGTGTTCAAGTCTGGTATGGCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatgatattgcggcagcaatcttccacattatctagacatgtgaatcctgttcctgtaattcaaatcagggcttct-caattttcttcaatcagct----
   ||||| ||||||| |||||||||||  |||| ||||||   ||  ||||||||||||||||||| || || ||||| |||   ||  | |||||| ||| || ||   |       | |||     |||        |    | |    | |    ||  |          | |  |  ||      | |   | ||     
--GACTTCCTGGAGCGCCGCCTGCAGACCCTGGTCTTCAAGCAGGGCCTGGCCAAGTCCATCCACCACGCGCGCGTGCTGATCCGCCAGCGCCACATCCGgtgagcatagaaaca----atcaaaagggcacgggggaggggagggagggcgcgggag-tgggacaggggcggcgacagcagcagccgattccgggctgcaacgc

upper sequence: PP1S14_31V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ11758 (Selaginella moellendorffii), 5'ss of exon 2
AGAACTTCTTGGAGCGTCGCCTGCAGACTTTGGTGTTCAAGTCTGGTATGGCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatgatattgcggcagcaatcttccacattatctagacatgtgaatcctgttcctgtaattcaaatcagggcttctcaattttcttcaatcagct----------------------------------------------
|||||||| | ||||| || || |||||| ||||||||||| | || ||||||||||| ||||| || || || || ||  ||| |||||| ||||||||||  |    | | | |     |  ||||   | ||   |   |   |   ||||  |||  |   || ||   |  |||      ||   | | | | ||                                              
AGAACTTCCTCGAGCGCCGGCTCCAGACTCTGGTGTTCAAGGCGGGCATGGCCAAGTCGATCCATCACGCGCGCGTTCTCGTCAGGCAAAGGCACATCAGgtgggatccaaagttc--tctctctctttttctttccttcttctcttagttccttctccactctctctaa---gttctttcttccttctcttagttatcttatcagatctccttgtgatctaacgagagtcttgcgaattggccag

upper sequence: PP1S14_31V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ13465 (Selaginella moellendorffii), 5'ss of exon 2
AGAACTTCTTGGAGCGTCGCCTGCAGACTTTGGTGTTCAAGTCTGGTATGGCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcag---tatgatattgcggcagcaatcttccacattatctagacatgtgaatcctgttcctgtaattcaaatcagggcttctcaattttcttca-atcagct---------------------------------
|||||||| | ||||| || || |||||| ||||||||||| | || ||||||||||| ||||| || || || || ||  ||| |||||| ||||||||||  |    |   |  |    |       ||||   || |||     |||    |    ||    | |||           ||| | || |  ||| |||  ||                                 
AGAACTTCCTCGAGCGCCGGCTCCAGACTCTGGTGTTCAAGGCGGGCATGGCCAAGTCGATCCATCACGCGCGCGTTCTCGTCAGGCAAAGGCACATCAGgtgggatccaaagttctctctctctttctttccttcttctcttagtttgttctccactctctctaagttctctcttccttctcttagttcttatcagatctccttgtgatctaacaagagttttgcgaattggccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206616|gb|FC382374.1|FC382374
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAT                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|7148149|gb|AW510071.1|AW510071
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATGAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGAGCCTTCTTTCATGGACCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162221676|gb|FC397901.1|FC397901
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|22491657|gb|BU051580.1|BU051580
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162213272|gb|FC389352.1|FC389352
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|19789508|gb|BQ041349.1|BQ041349
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162272057|gb|FC447851.1|FC447851
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162247658|gb|FC420570.1|FC420570
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|18341470|gb|BJ173505.1|BJ173505
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|19784999|gb|BQ040255.1|BQ040255
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162215217|gb|FC390803.1|FC390803
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|22131733|gb|BQ826772.1|BQ826772
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|22492118|gb|BU052041.1|BU052041
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|15728627|gb|BI740887.1|BI740887
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162244711|gb|FC425445.1|FC425445
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|15261925|gb|BI437235.1|BI437235
EST:     GCCAAGTCCATCCACCATGCCCGTGAGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162213273|gb|FC389353.1|FC389353
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|19789711|gb|BQ041466.1|BQ041466
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|22492156|gb|BU052072.1|BU052072
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162278883|gb|FC454934.1|FC454934
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|19776429|gb|BQ039080.1|BQ039080
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGTAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162241367|gb|FC416998.1|FC416998
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|37852085|gb|BJ610093.1|BJ610093
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|67700240|gb|BJ960473.1|BJ960473
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|67578437|gb|BJ950604.1|BJ950604
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162189505|gb|FC365519.1|FC365519
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGATCCGCTTGGACAC
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162272058|gb|FC447852.1|FC447852
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|67576706|gb|BJ949530.1|BJ949530
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTTCATGGTCCGCTTGGACA
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTT-CATGGTCCGCTTGGACA
EST: gi|100362884|gb|BY947577.1|BY947577
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162224730|gb|FC401978.1|FC401978
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|18325105|gb|BJ157101.1|BJ157101
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|67720679|gb|BJ970938.1|BJ970938
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|22131797|gb|BQ826807.1|BQ826807
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162224729|gb|FC401977.1|FC401977
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|18336648|gb|BJ168671.1|BJ168671
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162241366|gb|FC416997.1|FC416997
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162221675|gb|FC397900.1|FC397900
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162278884|gb|FC454935.1|FC454935
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162215216|gb|FC390802.1|FC390802
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|67701336|gb|BJ961569.1|BJ961569
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
EST: gi|162244712|gb|FC425446.1|FC425446
EST:     GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAG                         AGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG
genomic: GCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatga ... tatgtaacagAGTTGGCAAGCAGATAGTGGACGTGCCTTCTTTCATGGTCCGCTTGGACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAACTTCTTGGAGCGTCGCCTGCAGACTTTGGTGTTCAAGTCTGGTATGGCCAAGTCCATCCACCATGCCCGTGTGCTAATCAAGCAAAGACACATCAGgtcagtatgatattgcggcagcaatcttccacattatctagacatgtgaatcctgttcctgtaattcaaatcagggcttctcaattttcttcaatcagct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG