Skip to another splice site:
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag

Basic information

species Physcomitrella patens
transcript PP1S14_298V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 3
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggt-ttcgttctttcttgaattagatgc------gcatgagttt-gagcttttcaattaacgcgctgaatctcggaactcaacag
 ||||| |||||  | || || || || || || || || ||||||||||||||||| ||||| |||||||| ||||| ||||| || || || |||||||| | | |  | ||  |    |   |  ||  ||  ||||| ||    | |    |  |||  |||   |    |||| |   |    | | |    |      |||| ||||  | || ||| | |  |||   |           || | | ||  ||| |||   |  || | |   |   | || |  || |||
CGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCAATGATGGTGTTACCGTTGCAAAGGAGgt-atgccacgtatagta---aactgttcgtgttc-ttatgatgcaatccta---tcattgcttaaattcagagttttctg-aaaaatgactgaacat------ttggcataaactgtttgttttcttatgatgcaatcctatcatagcttaaattcagagttttctgaaaaatgagtgaacatttggcatgcaccag

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 3
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctt--tcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag
 || || || ||| | || || ||||| ||||| || || || || ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||         ||||       |||   |  | |||  ||  | | | |||| |  |  || |      |  |  | |   |    | |||    ||  || | |    ||| | | | |    |   | || |  ||                                                      
CGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCAATGATGGTGTCACTGTGGCAAAGGAGgtg------cacatc-------tgactacaaacttaccatcgtttgttcttgctcgtactgcaaccataccctgctctaacttcttgtggc----tgccgagtttcctcatatgttctgggctgtggccatgcaccag------------------------------------------------------

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 2
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgc-gattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag
 ||||| |||||  | || ||||||||  |||| || || || ||||||||||||||||| || ||||| || || |||||||||||||| || || |||||   | |||   |  | |  ||     || | | ||| |  || ||  ||  |||||     | |  || | |  || || | |     |       ||  ||                                                                                       
GGTTGGGGTCACGCTTGGTCCCAAGGGAAGAAATGTTGTTCTCGAGAGCAAGTATGGCTCGCCGAAAATCGTTAACGACGGTGTCACTGTCGCTAAAGAGgt---gactttttttttttgaattttgtcgtact-attgttatggttgtttcttttttcgaatttaaagcaggtaattattgtaaaaaccgacaaacttatcat---------------------------------------------------------------------------------------

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgt-tagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag
||||||||||||  | || || || ||  |||| || || ||||||||||||||||| || || | |||||| ||||| ||||||||||| || | |||||| |     ||     || | ||          ||  ||  ||| |||| ||  || | |  | | |  |   | || |  ||                                                                                                            
TGTTGGTGTCACACTTGGACCAAAAGGGAGAAATGTTGTTCTTGAGAGCAAGTATGGATCCCCAAGAATTGTTAATGATGGTGTCACTGTTGCGAGGGAGgtatgaaatttattgtctgtttaaccaattatgttcctttcgtt-tttaattacttctctaagcttaaggttttcttctgcttag----------------------------------------------------------------------------------------------------------

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 3
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag
 || || || ||| | || || || ||| | || || || || ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| |||||  |   ||   | || |  ||         ||| ||| ||| |    ||| ||||||  | | |    |            | |   || || | || | | |||   | |  ||   ||                                                                    
AGTGGGAGTTACTCTTGGTCCAAAAGGCAGGAATGTTGTCCTAGAGAGCAAGTATGGCTCCCCAAAAATTGTTAATGATGGTGTAACTGTGGCCAAAGAGgtatg---ttaagttctattaatt--------ttttttaagttctagttttgcttttttaagttgaatatggaac-------aaagccagcaggctata-agttttg---tcaatttctctt--------------------------------------------------------------------

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 2
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag
 || || || ||| | || || || ||  | || || || || |||||||||||||| || || |||||||| ||||| ||||| |||||||| |  |||||      |  |||        |||     || |  ||||  |       ||||       | |  || ||| |      || | |       ||  ||  ||  |    | | || |                                                                        
AGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTAATGATGGTGTTACTGTGGCAAGAGAGgtataaattatcat--------tgaataatgaatatttatact-----tctggt-------ggtgggc-cgactagagcattaaagaaaatatgggttatgataatttatttacgtatata---------------------------------------------------------------------

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ36935 (Selaginella moellendorffii), 5'ss of exon 2
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccgga-tttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag
 || || || |||||||| ||||||||  ||||||| ||||| |||||||||||||| || || || ||||| || || || |||||||| ||||| |||||  |       |       |  |    |  | | | || |||| ||| ||   | |||   |                                                                                                                                
AGTGGGAGTTACTTTGGGTCCCAAGGGAAGAAACGTGGTGCTCGAGAGCAAGTATGGATCTCCAAAGATTGTCAACGATGGAGTCACTGTTGCCAAAGAGgtaggaaggaaaagataaaatgcggctacaaagtcttttgtgtt-tttgctctttgtttgcag--------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ33580 (Selaginella moellendorffii), 5'ss of exon 2
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag
 || || || |||||||| ||||||||  ||||||| ||||| |||||||||||||| || || || ||||| || || || |||||||| ||||| |||||   ||      |         |   |    | | || || | ||| ||   | |||   |                                                                                                                                
AGTGGGAGTTACTTTGGGTCCCAAGGGAAGAAACGTGGTGCTCGAGAGCAAGTATGGATCTCCAAAGATTGTCAACGATGGAGTCACTGTTGCCAAAGAGgtagagggaaaagttaaaatgcggctacaaagtcttttgtgct-tttgctctttgtttgcag--------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18365874|gb|BJ197952.1|BJ197952
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162171350|gb|FC346443.1|FC346443
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|67717000|gb|BJ967259.1|BJ967259
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|67570060|gb|BJ942884.1|BJ942884
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|208371103|gb|DC931563.1|DC931563
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|18325539|gb|BJ157536.1|BJ157536
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|208353715|gb|DC929716.1|DC929716
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|67709685|gb|BJ965501.1|BJ965501
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|100399573|gb|BY972786.1|BY972786
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162195954|gb|FC372151.1|FC372151
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|208351065|gb|DC913501.1|DC913501
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162170824|gb|FC347438.1|FC347438
EST:     GTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: GTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|18351786|gb|BJ183838.1|BJ183838
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162157418|gb|FC333195.1|FC333195
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|100446886|gb|CJ971185.1|CJ971185
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162187436|gb|FC362658.1|FC362658
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162193667|gb|FC371246.1|FC371246
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162173847|gb|FC349439.1|FC349439
EST:     CAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: CAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162158432|gb|FC334227.1|FC334227
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|100371786|gb|BY967552.1|BY967552
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|18362987|gb|BJ195059.1|BJ195059
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|100436275|gb|BY961135.1|BY961135
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162195933|gb|FC372143.1|FC372143
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|208359427|gb|DC939152.1|DC939152
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|208399108|gb|DC904517.1|DC904517
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|18348726|gb|BJ180775.1|BJ180775
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAN                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGANGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162167160|gb|FC343636.1|FC343636
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162255992|gb|FC431756.1|FC431756
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162227587|gb|FC403529.1|FC403529
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|208362500|gb|DC939480.1|DC939480
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|162158158|gb|FC333953.1|FC333953
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|18373756|gb|BJ205334.1|BJ205334
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|100440490|gb|BY962227.1|BY962227
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
EST: gi|18367415|gb|BJ199498.1|BJ199498
EST:     AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAG                         GTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA
genomic: AGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 14

TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggctt ... aactcaacagGTTGAGCTTGAGGATCCAGTCGAGAACATCGGTGCCAAGTTGGTGAGGCAAGCGGCAGCCAAGACGAATGACTTGGCTGGTGACGGTACCACCACCTCTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGGTGTCACTTTGGGGCCCAAGGGCCGAAACGTCGTGCTTGAGAGCAAGTATGGCTCACCCAAAATTGTGAATGACGGTGTCACTGTGGCCAAGGAGgttagggcttgcatcctctctatgagcccggatttattatgttgtttacttggtttttttggataagcgcgattttttttttgaggggggcggggtgtagaatcttgggataaggtttcgttctttcttgaattagatgcgcatgagtttgagcttttcaattaacgcgctgaatctcggaactcaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG