1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTACGTGAAATATGTTGTGGCGGGAACTGATTTCGAAGTCACCGCGAGGTACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTGgttagaatccctccctctgagcttaaagttgttttattccattctgttttctacctgagttccacgagctgttgttaacagttcatatgtgcttcagttc...
species | Physcomitrella patens |
transcript | PP1S149_39V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTG TTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGGEST: gi|162154102|gb|FC330545.1|FC330545
genomic: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTGgttagaatcc ... gcctatgcagTTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGG
EST: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTG TTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGGEST: gi|100357153|gb|BY983720.1|BY983720
genomic: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTGgttagaatcc ... gcctatgcagTTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGG
EST: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTG TTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGGEST: gi|18347968|gb|BJ180015.1|BJ180015
genomic: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTGgttagaatcc ... gcctatgcagTTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGG
EST: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTG TTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGG
genomic: TACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTGgttagaatcc ... gcctatgcagTTCACTCTTTGATACCGTTACGGGTGAGGAGGTGGCGGTCAAAAAGATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTACGTGAAATATGTTGTGGCGGGAACTGATTTCGAAGTCACCGCGAGGTACAAGCCACCACTTCGTCCGATTGGGCGCGGAGCTTATGGAATCGTCTGgttagaatccctccctctgagcttaaagttgttttattccattctgttttctacctgagttccacgagctgttgttaacagttcatatgtgcttcagttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT