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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGGAAAGACCATGCTTGCCAAGGCTGTCGCTCACCATACCACTGCAGCTTTCATTCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTTGGGGAGgtagggtttctgacataatcacttcattagattttgtttgtgtctgtcaccgctttttagtttttaaaatttttatctcttttcatgtgataagtttagc...

Basic information

species Physcomitrella patens
transcript PP1S147_100V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 2
AACGGGAAAGACCATGCTTGCCAAGGCTGTCGCTCACCATACCACTGCAGCTTTCATTCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTTGGGGAGgtagggtttctgacataatcact----tcattagattttgtttgtgtctgtcaccgctttttagtttttaaaatttttatctcttttcatgtgataagtttagc
 || || ||||||||||||||||| || ||||| || |||||||| || ||||| ||  | || |||||||| ||||||||||| |||||  | || |||||| |  ||  |||||     ||    | ||   | | ||  |   | ||     | | |  | | |    ||||  ||  | |     ||   || ||   | 
TACTGGCAAGACCATGCTTGCCAAAGCAGTCGCACATCATACCACCGCTGCTTTTATCAGAGTCGTTGGTTCGGAGTTTGTACAGAAGTACTTGGGCGAGgtaag--ttgggacatgggagctattataatgccaatatgaattcttttggattggatataaaatgtagtgaattcataggtatggcgttgcc-taggtcctg-

upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 2
AACGGGAAAGACCATGCTTGCCAAGGCTGTCGCTCACCATACCACTGCAGCTTTCATTCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTTGGGGAGgtagggtttctgacataatcacttcattagattttgtttgtgtctgtcaccgctttttagtttttaaaatttttatctcttttcatgtgataagtttagc
 || || ||||||||||||||||| || || || || ||||||||||| ||||| ||  | || || ||||| |||||||| ||||||||  | || |||||| | |    |  ||     |   ||  || |   |||| ||  |  |     | |       | |    | |       || ||| | ||  ||  ||
TACTGGCAAGACCATGCTTGCCAAAGCAGTTGCACATCATACCACTGCTGCTTTTATCAGGGTCGTCGGTTCAGAGTTTGTTCAAAAGTACTTGGGTGAGgtaagttgggagctattgagtcccaatatgactccttttgagttggatataaaatgtagtgaactgatgcatgttataagattaatgggttagtttatgc

upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 2
AACGGGAAAGACCATGCTTGCCAAGGCTGTCGCTCACCATACCACTGCAGCTTTCATTCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTTGGGGAGgtagggtttctgacataatcacttcattagattttgtttgtgtctgtcaccgctttttagtttttaaaatttttatctcttttcatgtgataagtttagc----
 || || || || ||||||||||| ||||| ||| | ||||||||||| || |||||  | ||||| || ||||||||||| |||||||||||||| |||||| | ||| | |  | |||  |||||| |  |  | |  || |  |    |    ||| | |   |  ||| | ||| |||  |  | ||  ||||       
CACTGGCAAAACAATGCTTGCCAAAGCTGTTGCTAATCATACCACTGCCGCCTTCATCAGGGTTGTAGGATCTGAGTTTGTGCAAAAGTATCTTGGTGAGgtatgatttttaa-gtcatc--ttcatttggatgcgatgttgacaat-gttgtaacttactctgctatctttgtttctttttgaaaattatgggtttccaattc

upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA18G05730.1 (Glycine max), 5'ss of exon 2
-AACGGGAAAGACCATGCTTGCCAAGGCTGTCGCTCACCATACCACTGCAGCTTTCATTCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTTGGGGAGgtagggtttctgacataatcacttcattagattttgtttgtgtctgtcaccgctttttagtttttaaaatttttatctcttttcatgtgataagtttagc---
  || || || || ||||||||||| ||||| ||  | ||||||||||| ||||||||  | ||||| || ||||||||||| || ||||||||||| ||||||   ||| | | || |||  | |||  |  | || |  || |  |    |    ||| | |   |  ||| | ||| |||  |  | ||  ||||      
GCACTGGCAAAACAATGCTTGCCAAAGCTGTTGCGAATCATACCACTGCTGCTTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAggtatcattttt-atatcatc--tgcatatggatgtgatgttgacaat-gttgtagcttactctgctatctttgtttctttttgaaaattatgggtttccaatt

upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA11G31450.1 (Glycine max), 5'ss of exon 2
AACGGGAAAGACCATGCTTGCCAAGGCTGTCGCTCACCATACCACTGCAGCTTTCATTCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTTGGGGAGgtagggtttctgacataatcacttcattagattttgtttgtgtctgtcaccgctttttagtttttaaaatttttatctcttttcatgtgataagtttagc-----
 || ||||| || ||||||||||| ||||| ||  | ||||||||||| || |||||  | ||||| || ||||||||||| || ||||||||||| |||||| | |||   |  | |||  | |||| |  |  | |  || |  |    |    ||| | |   |  ||  | ||| |||  |  | ||  ||||        
CACTGGAAAAACAATGCTTGCCAAAGCTGTTGCGAATCATACCACTGCCGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAGgtatgatttt--aagtcatc--tgcatttggatgcgatgttgacaat-gttgtagcttactctgctatcttagtttctttttgaaaattatgggtttccaattca

upper sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ04233 (Selaginella moellendorffii), 5'ss of exon 2
AACGGGAAAGACCATGCTTGCCAAGGCTGTCGCTCACCATACCACTGCAGCTTTCATTCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTTGGGGAGgta-gggtttctgacataatcacttcattagattttgtttgtgtctgtcaccgctttttagtttttaaaatttttatctcttttcatgtgataagtttagc
 || || || ||||||||||| ||||| ||||| ||||| |||||||| |||||||| || ||||| || || ||||| || || ||||||||||| |||||  ||     |  | |  |   |||  |  |   |  |  | | || ||| |                                                
CACTGGGAAAACCATGCTTGCAAAGGCCGTCGCGCACCACACCACTGCCGCTTTCATCCGCGTTGTGGGCTCGGAGTTCGTCCAGAAGTATCTTGGAGAGgtgtggaaccttttcttttttctttctcttcacgcttgtcttctgtggcacag------------------------------------------------