1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGCAGCCCACTTTCAGGAGTTCTCCATTGAACGCTCGCATTCTTTCCGGCATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgcccgctgattgtttccgttccttcgatatttgcattgttgacttgacttgagctttgtttagttgggattatatggtctcttacacaagcttactcatccaagggcgagcgaactcatatatttttacttgcaatatgtccctcag
species | Physcomitrella patens |
transcript | PP1S142_132V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG GTCCTGAGGCACCACCCATTTTCAAACTGTEST: gi|162236289|gb|FC412032.1|FC412032
genomic: GTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTC-AACTGT
EST: CGATTTGGAAATTG GTCCTGAGGCACCAGCCATTTTCAACTGTEST: gi|208396434|gb|DC920086.1|DC920086
genomic: CGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: CCATGGCACGATTTGGAAATNG GTCCTGAGGCACCAGCCATTTTCAACTGTEST: gi|208381293|gb|DC919183.1|DC919183
genomic: CCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG GTCCTGAGGCACCAGCCATTTTCAACTGTEST: gi|162259318|gb|FC436209.1|FC436209
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG GTCCTGAGGCACCAGCCATTTTCAACTGTEST: gi|208380290|gb|DC922712.1|DC922712
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG GTCCTGAGGCACCAGCCATTTTCAACTGTEST: gi|67698989|gb|BJ959222.1|BJ959222
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
EST: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTG GTCCTGAGGCACCAGCCATTTTCAACTGT
genomic: CATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgc ... tgtccctcagGTCCTGAGGCACCAGCCATTTTCAACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCAGCCCACTTTCAGGAGTTCTCCATTGAACGCTCGCATTCTTTCCGGCATGGAGCGTCGTACGGTGGCTGCTCACCCATGGCACGATTTGGAAATTGgtgagtttgcccgctgattgtttccgttccttcgatatttgcattgttgacttgacttgagctttgtttagttgggattatatggtctcttacacaagcttactcatccaagggcgagcgaactcatatatttttacttgcaatatgtccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT