1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGCCTTTTTAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaatctgccgaactttgttggtgaccgaggcatctatatcgctttccgtatcaattcctcgaattcccttatcgaaaatgccgctattttaggtgtgtgttgcgagttttttctttcacatgaagataagattttaggaatataaatgctctacgtcgcttttcaaattcctgcag
species | Physcomitrella patens |
transcript | PP1S142_120V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGAEST: gi|67718504|gb|BJ968763.1|BJ968763
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAANCAN GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGAEST: gi|100447765|gb|CJ972064.1|CJ972064
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGAEST: gi|100364655|gb|BY947842.1|BY947842
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTTGAAACA-TACGGGGTGEST: gi|208394382|gb|DC942542.1|DC942542
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTT-GAAACAATACGGGGTG
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACNGGGGTGEST: gi|100447644|gb|CJ971943.1|CJ971943
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATAC-GGGGTG
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGANGCTACTTTTTGAAACAATACGGGGTGAEST: gi|100446744|gb|CJ971043.1|CJ971043
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGAEST: gi|100394755|gb|BY989909.1|BY989909
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGAEST: gi|208384748|gb|DC915281.1|DC915281
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGNATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGANGCTACTTTTTGAAACAATACGGGGTGAEST: gi|162179840|gb|FC355911.1|FC355911
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGAEST: gi|67717323|gb|BJ967582.1|BJ967582
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGAEST: gi|67574064|gb|BJ946888.1|BJ946888
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
EST: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAG GTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
genomic: TAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaa ... attcctgcagGTACTGATGTTGCTGGAGGACGAGGCTACTTTTTGAAACAATACGGGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCAGGTCGTTCGGAAATGGGGAACTCTTAGAGAAGAAGCCGGCCTTTTTAACCATGTGGATCTCGTGAACAAATTGGGAATTGTTGAGCTTGAAGCAGgtattaagaatctgccgaactttgttggtgaccgaggcatctatatcgctttccgtatcaattcctcgaattcccttatcgaaaatgccgctattttaggtgtgtgttgcgagttttttctttcacatgaagataagattttaggaatataaatgctctacgtcgcttttcaaattcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC