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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTATGGCTTTTGAAGCTCCTGGTATTGAAGTGATAGGACTTACCACCATTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttttttttttttttttttttttttttttttgatttcctctctctgtctctctctttacctttttctgctttgtctttggtcctagggagacgt...

Basic information

species Physcomitrella patens
transcript PP1S140_172V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208350886|gb|DC909933.1|DC909933
EST:     TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG                         TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: gi|100360499|gb|BY983815.1|BY983815
EST:     TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG                         TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: gi|208357242|gb|DC910653.1|DC910653
EST:     TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG                         TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: gi|208358940|gb|DC939224.1|DC939224
EST:     TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG                         TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
EST: gi|162252651|gb|FC428688.1|FC428688
EST:     TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTG                         TGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA
genomic: TTTTTGGGAATGTAGATATCGATTTGGCCACTAAGAATGCTCTCCATCTGgtgatttttt ... gcgttcgtagTGTGAGATGACAGGTCATCCAGAGATACCAGTTGCGGAAGGACCCTCTGAA