1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGATCCGGAACATCGATTTGGTGTATGGTGGAGGTAGTATTGGGCTGATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGGgtaagtgcatgcccctgaaacttggccgatcatgttaatcgtgtccaactgatgccgcttcgtgatcacaagtttttgaaagtgtggtcttttggtcgta...
species | Physcomitrella patens |
transcript | PP1S13_423V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGG CGTTATTCCAAAGGCATTGATTGGAAAANAACTTACTGGAAGCACAGTGGGEST: gi|18352037|gb|BJ184090.1|BJ184090
genomic: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGGgtaagtgcat ... gtgaaaccagCGTTATTCCAAAGGCATTGATTGGAAAAGAACTTACTGGAAGCACAGTGGG
EST: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGG CGTTATTCCAAAGGCATTGATTGEST: gi|208376681|gb|DC932145.1|DC932145
genomic: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGGgtaagtgcat ... gtgaaaccagCGTTATTCCAAAGGCATTGATTG
EST: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGG CGTTATTCCAAAGGCATTGATTGGAAAAGAACTTACTGGAAGCACAGTGGGEST: gi|208360660|gb|DC930471.1|DC930471
genomic: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGGgtaagtgcat ... gtgaaaccagCGTTATTCCAAAGGCATTGATTGGAAAAGAACTTACTGGAAGCACAGTGGG
EST: ATGGGTCAAGTGGCACAGACAGTCNAAGCTGGAGGCGNCAAAGTATGNGG CGTTATTCCAAAGGCATTGATTGGAAAANAACTTACTGGAAGCACAGTGAGEST: gi|208400182|gb|DC904830.1|DC904830
genomic: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGGgtaagtgcat ... gtgaaaccagCGTTATTCCAAAGGCATTGATTGGAAAAGAACTTACTGGAAGCACAGTGGG
EST: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGG CGTTATTCCAAAGGCATTGATTGGAAAAGAACTTACTGGAAGCACAGTGGG
genomic: ATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGGgtaagtgcat ... gtgaaaccagCGTTATTCCAAAGGCATTGATTGGAAAAGAACTTACTGGAAGCACAGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATCCGGAACATCGATTTGGTGTATGGTGGAGGTAGTATTGGGCTGATGGGTCAAGTGGCACAGACAGTCGAAGCTGGAGGCGGCAAAGTATGTGGgtaagtgcatgcccctgaaacttggccgatcatgttaatcgtgtccaactgatgccgcttcgtgatcacaagtttttgaaagtgtggtcttttggtcgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG