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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgtttctctggaattatcatgtataataacattcactacgcacatagctagtatatacactcaatttaacgaattttttatgtcagtaattagtg...

Basic information

species Physcomitrella patens
transcript PP1S13_410V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S13_410V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDO97033 (Chlamydomonas reinhardtii), 5'ss of exon 3
AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt---ctctggaattatcatgtataataacattcactacgcacatagctagtatatacactcaatttaacgaattttttatgtcagtaattagtg
   |||| |||||||| ||||| ||||| || || ||||||   ||| |||||||||||||||||||||| || || || |||   || ||||||||| ||| ||  |     |  |  ||    || |    |    |   |   |||           |    |    |    | |      ||   | | | ||      
--GACTTCCTGGAGCGCCGCCTGCAGACCCTGGTCTTCAAGCAGGGCCTGGCCAAGTCCATCCACCACGCGCGCGTGCTGATCCGCCAGCGCCACATCCGgtgagcatagaaacaatcaaaagggcacgggggaggggagggagggcgcgggagtgggacaggggcggcgacagcagcagccgattccgggctgcaacgc---

upper sequence: PP1S13_410V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ11758 (Selaginella moellendorffii), 5'ss of exon 2
AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgtttctctggaattatcatgtataataacattcactacgcacatagctagtatatacactcaatttaacgaattttttatgtcagtaattagtg-----------------------------------------------
||||||| || ||||| || ||||||||||| ||||||||| | |||||||||||||| ||||| ||||| || |||||| ||| |||| | ||||||||||  |      ||   | || ||        |  | |||  |   | | ||| |  | | | |||||  | |||    ||| ||   ||  | | |  |                                                
AGAACTTCCTCGAGCGCCGGCTCCAGACTCTGGTGTTCAAGGCGGGCATGGCCAAGTCGATCCATCACGCGCGCGTTCTCGTCAGGCAAAGGCACATCAGgtggga-----tccaaagttctctctctctttttctttccttcttctcttagttcct-tctccactctctctaagttctttcttccttctcttagttatcttatcagatctccttgtgatctaacgagagtcttgcgaattggccag

upper sequence: PP1S13_410V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ31761 (Selaginella moellendorffii), 5'ss of exon 2
AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgtttctctggaattatcatgtataataacattcactacgcacatagctagtatatacactcaatttaacgaattttttatgtcagtaattagtg--
||||||| || ||||| || || || ||||| || |||||| | |||||||||||||| ||||| ||||| || |||||| ||| |||| | |||||||||||  |  |    | |  |  || | | |  |    ||   |  ||   | |    | | |||     || || |   || | | ||       | |||   
AGAACTTCCTTGAGCGCCGGCTGCAAACTCTGGTCTTCAAGGCGGGCATGGCCAAGTCGATCCATCACGCTCGCGTTCTCGTCAGGCAAAGGCACATCAGgtccattctctcttcggttcttcgt-tcttttggtttttcgtttgctttttgg-gatctctacctgtgatctatcttcttctctttgcttcctttgagtact

upper sequence: PP1S13_410V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ13465 (Selaginella moellendorffii), 5'ss of exon 2
AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgtttctctggaattatcatgtataataacattcactacgcacatagctagtatatacactcaatttaa----cgaattttttatgtcagtaattagtg-----------------------------------------
||||||| || ||||| || ||||||||||| ||||||||| | |||||||||||||| ||||| ||||| || |||||| ||| |||| | ||||||||||  |      ||   | || ||        |  | |||  |   | | ||| | || | | |||||  | |||        ||  || | | |||  |||                                            
AGAACTTCCTCGAGCGCCGGCTCCAGACTCTGGTGTTCAAGGCGGGCATGGCCAAGTCGATCCATCACGCGCGCGTTCTCGTCAGGCAAAGGCACATCAGgtggga-----tccaaagttctctctctc--tttctttccttcttctcttagtttgt-tctccactctctctaagttctctcttccttctcttagttcttatcagatctccttgtgatctaacaagagttttgcgaattggccag

upper sequence: PP1S13_410V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ38391 (Selaginella moellendorffii), 5'ss of exon 2
AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgtttctctggaattatcatgtataataacattcactacgcacatagctagtatatacactcaatttaacgaattttttatgtcagtaattagtg---
||||||| || ||||| || || || ||||| || |||||| | |||||||||||||| ||||| ||||| || |||||| ||| |||| | |||||||||||  | | |||||    || |  | | |  |    ||   |  ||   | |    | | | |     || || |   || | | ||       | | |    
AGAACTTCCTTGAGCGCCGGCTGCAAACTCTGGTCTTCAAGGCGGGCATGGCCAAGTCGATCCATCACGCTCGCGTTCTCGTCAGGCAAAGGCACATCAGgtccat-tctctcttcggttcttctctcttttggtttttcgtttgcttttgg--gatctcttcctgtgatctatcttcttctctttgcttcctttgactactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7067134|gb|AW496989.1|AW496989
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACATATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18344369|gb|BJ176409.1|BJ176409
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACA
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAA-TCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACA
EST: gi|162232680|gb|FC409231.1|FC409231
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18339444|gb|BJ171471.1|BJ171471
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162242785|gb|FC417555.1|FC417555
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|37853513|gb|BJ611521.1|BJ611521
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162267743|gb|FC443733.1|FC443733
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|37830958|gb|BJ588970.1|BJ588970
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18330899|gb|BJ162905.1|BJ162905
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18339687|gb|BJ171714.1|BJ171714
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67726000|gb|BJ976259.1|BJ976259
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18326601|gb|BJ158600.1|BJ158600
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|37848389|gb|BJ606397.1|BJ606397
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67720152|gb|BJ970411.1|BJ970411
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|19780475|gb|BQ039566.1|BQ039566
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18367844|gb|BJ199927.1|BJ199927
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTTCGATGTCCCCTCTTTTATGGTTCGCGTTGACA
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGT-CGATGTCCCCTCTTTTATGGTTCGCGTTGACA
EST: gi|67728167|gb|BJ978426.1|BJ978426
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18342984|gb|BJ175020.1|BJ175020
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCNCATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGGTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162276211|gb|FC452903.1|FC452903
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162242784|gb|FC417554.1|FC417554
EST:     GCCAAGTCCATCCACCACGCCCGTGTTTTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162250884|gb|FC426928.1|FC426928
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|19789760|gb|BQ041495.1|BQ041495
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162200825|gb|FC377020.1|FC377020
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162224897|gb|FC401105.1|FC401105
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67573651|gb|BJ946475.1|BJ946475
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162267744|gb|FC443734.1|FC443734
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162161802|gb|FC338229.1|FC338229
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|37822132|gb|BJ580198.1|BJ580198
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162242441|gb|FC416158.1|FC416158
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67719905|gb|BJ970164.1|BJ970164
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|7066992|gb|AW496847.1|AW496847
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAT                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTCTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162276210|gb|FC452902.1|FC452902
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162242440|gb|FC416157.1|FC416157
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162260272|gb|FC435575.1|FC435575
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162200824|gb|FC377019.1|FC377019
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|18346620|gb|BJ178665.1|BJ178665
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACA
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAA-TCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACA
EST: gi|162260672|gb|FC436676.1|FC436676
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67699582|gb|BJ959815.1|BJ959815
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|37829233|gb|BJ587245.1|BJ587245
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|19779619|gb|BQ039455.1|BQ039455
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67717483|gb|BJ967742.1|BJ967742
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67697037|gb|BJ957270.1|BJ957270
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67725474|gb|BJ975733.1|BJ975733
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|37823568|gb|BJ581634.1|BJ581634
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|162241698|gb|FC417225.1|FC417225
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67716955|gb|BJ967214.1|BJ967214
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
EST: gi|67727576|gb|BJ977835.1|BJ977835
EST:     GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAG                         GGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG
genomic: GCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 41

AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgttt ... gtcttgacagGGTCGGCAAACAAATCGTCGATGTCCCCTCTTTTATGGTTCGCGTTGACAGTCAGAAGCACGTTGACTTTGCTCTGTCAAGCCCACTTGGTGGCGGAAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAACTTTCTGGAGCGACGCCTCCAGACTCTTGTGTTCAAGTCTGGCATGGCCAAGTCCATCCACCACGCCCGTGTTCTCATCAAGCAACGCCACATCAGgtcagtgtttctctggaattatcatgtataataacattcactacgcacatagctagtatatacactcaatttaacgaattttttatgtcagtaattagtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA