1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTTGGTTGTACGGACGTGGGGGACTCCGAGAGACCAATCAGGCCTTGTGAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAGgtaacaaggtccttctgatctatcagctgtcagtgtatgcgtgatggtatttgcccattgaagagttctgccaccaaagattacacgttggaaactgaatgagactcttgctcttccttttatggaggagaatagtctctgaatgtggttggtgtttcccggtgctccaattactgcag
species | Physcomitrella patens |
transcript | PP1S13_192V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAG GTACAGATGTAGCTGGGGGCCGGGGCTACTTCCTAAAACAATACGGAGTGAEST: gi|100443625|gb|BY963722.1|BY963722
genomic: GAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAGgtaacaaggt ... attactgcagGTACAGATGTAGCTGGGGGCCGGGGCTACTTCCTAAAACAATACGGAGTGA
EST: GAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAG GTACAGATGTAGCTGGGGGCCGGGGCTACTTCCTAAAACAATACGGAGTGAEST: gi|100444896|gb|BY982724.1|BY982724
genomic: GAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAGgtaacaaggt ... attactgcagGTACAGATGTAGCTGGGGGCCGGGGCTACTTCCTAAAACAATACGGAGTGA
EST: GAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAG GTACAGATGTAGCTGGGGGGCCGGGGCTACTTCCTAAAACAATACGGAGTG
genomic: GAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAGgtaacaaggt ... attactgcagGTACAGATGTAGCTGGGGG-CCGGGGCTACTTCCTAAAACAATACGGAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTGGTTGTACGGACGTGGGGGACTCCGAGAGACCAATCAGGCCTTGTGAACCATGTAGATCTTGTGAATAAATTGGGCATTGTTGATCTTGAAGCAGgtaacaaggtccttctgatctatcagctgtcagtgtatgcgtgatggtatttgcccattgaagagttctgccaccaaagattacacgttggaaactgaatgagactcttgctcttccttttatggaggagaatagtctctgaatgtggttggtgtttcccggtgctccaattactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC