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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGAAGCTGTGGAATGTCTTCGGCAAACAATGGCTGCTGCTCCATGGACGACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttctgccatggctctagtcaaattcgtgcgtgtatgttgtggatattcacaccataaaacgtaagccttgaggacgatttgtaggtttgagacgtgccgaattgtttggtgattcctgtacag

Basic information

species Physcomitrella patens
transcript PP1S138_43V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18358981|gb|BJ191041.1|BJ191041
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|18347417|gb|BJ179463.1|BJ179463
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGT
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGT
EST: gi|208389033|gb|DC937366.1|DC937366
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|208397502|gb|DC908322.1|DC908322
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|208353132|gb|DC913890.1|DC913890
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|100385660|gb|BY987725.1|BY987725
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACTCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|208358936|gb|DC939220.1|DC939220
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|100429318|gb|BY978050.1|BY978050
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|100436724|gb|BY979494.1|BY979494
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|208391614|gb|DC938227.1|DC938227
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|208384210|gb|DC911304.1|DC911304
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|18349770|gb|BJ181820.1|BJ181820
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAA
EST: gi|208367215|gb|DC935819.1|DC935819
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|18362193|gb|BJ194262.1|BJ194262
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
EST: gi|208389798|gb|DC937433.1|DC937433
EST:     GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAG                         TGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA
genomic: GACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttct ... tcctgtacagTGAAGAAAGAGCGGAGAAATTGGCATTGCTACGCAATCACGTTGGTGGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGAAGCTGTGGAATGTCTTCGGCAAACAATGGCTGCTGCTCCATGGACGACAGAGAGCCTGAGGGAGGATGCAATCCGCGCCCATTCGACACTCACAGgttcgcttctgccatggctctagtcaaattcgtgcgtgtatgttgtggatattcacaccataaaacgtaagccttgaggacgatttgtaggtttgagacgtgccgaattgtttggtgattcctgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG