1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCGAGCTCGCTGAAGATGGTTACTCTGGCGTGGAGGTGCGTGTCACCCCCATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcag
species | Physcomitrella patens |
transcript | PP1S136_175V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18342317|gb|BJ174352.1|BJ174352
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18348091|gb|BJ180138.1|BJ180138
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162238741|gb|FC419052.1|FC419052
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|100353473|gb|BY964824.1|BY964824
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18328942|gb|BJ160948.1|BJ160948
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162265655|gb|FC441618.1|FC441618
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|37823786|gb|BJ581852.1|BJ581852
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162258820|gb|FC434827.1|FC434827
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18328002|gb|BJ160006.1|BJ160006
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162267778|gb|FC443768.1|FC443768
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162258819|gb|FC434826.1|FC434826
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|37824033|gb|BJ582099.1|BJ582099
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18341560|gb|BJ173595.1|BJ173595
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|37830179|gb|BJ588191.1|BJ588191
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: GTACCGAGATCATCATCCGCGCTANCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18344831|gb|BJ176872.1|BJ176872
genomic: GTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162280359|gb|FC456064.1|FC456064
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162265654|gb|FC441617.1|FC441617
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18332204|gb|BJ164217.1|BJ164217
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|37821437|gb|BJ579503.1|BJ579503
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGT-CCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18332244|gb|BJ164257.1|BJ164257
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18344586|gb|BJ176627.1|BJ176627
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|67719851|gb|BJ970110.1|BJ970110
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162280358|gb|FC456063.1|FC456063
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|37827462|gb|BJ585474.1|BJ585474
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18337153|gb|BJ169177.1|BJ169177
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|100444204|gb|BY964102.1|BY964102
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|18336232|gb|BJ168254.1|BJ168254
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|208375019|gb|DC956415.1|DC956415
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|67728112|gb|BJ978371.1|BJ978371
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|162238740|gb|FC419051.1|FC419051
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGTEST: gi|208386351|gb|DC932847.1|DC932847
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
EST: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGG GTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
genomic: CATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcg ... ttgttggcagGTGAGAAGGGACGTAGGATTAGAGAATTGACATCTGTGGTACAGAAGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGAGCTCGCTGAAGATGGTTACTCTGGCGTGGAGGTGCGTGTCACCCCCATGCGTACCGAGATCATCATCCGCGCTACCCGTACCCAGAACGTTTTGGgtgggtctcgagcctctctgggttttttgcacatttggttactgctgtgtttaagagtcattaaaattaacgaagcgcgagttggtgacgtatagggtttggaggattgaggtagggtgagtgtgttgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA