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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACCACACAAAACTGGAAAGCGTTGGTACTGAAGACTATTTCTGTCGCTTCGAATACAAAGCTTCCACTGGCGCGTTCAGTCCTGATCGAGTTGCCGTgtgagtaattttccaattagtttaatcagttcagagtagggagttgtattttattggttttatacttaggagtcactggctacaaagtatccagtatcat...

Basic information

species Physcomitrella patens
transcript PP1S133_46V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S133_46V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 1
AAAACCACACAAAACTGGAAAGCGTTGGTACTGAAGACTATTTCTGTCGCTTCGAATACAAAGCTTCCACTGGCGCGTTCAGTCCTGATCGAGTTGCCGTgtgagtaattttccaattagtttaatcagttcaga----gtagggagttgtattttattggttttatacttaggagtcactggctacaa-agtatccagtatcat
| | | |||| || || ||    || || |  || || |  |||||||| || || |||||  | ||||| ||||| |||| ||||||| ||||||||||||||||   |  | | |  | |  ||   |  | |    ||    || | |  |    |   ||   | | |   ||   ||  |     || ||   ||     
AGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTgtgagtccatcactactccgatatatatatatatattctgttataagctctgctgcgctaaattcgcaataaattgttcttgtttttggtaggatttcgt-----

upper sequence: PP1S133_46V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA06G01180.3 (Glycine max), 5'ss of exon 2
--AAAACCACACAAAACTGGAAAGCGTTGGTACTGAAGACTATTTCTGTCGCTTCGAATACAAAGCTTCCACTGGCGCGTTCAGTCCTGATCGAGTTGCCGTgtgagtaattttccaattagtttaatcagttcaga----gtagggagttgtattttattggttttatacttaggagtcactggctacaa-agtatccagtatcat
  | | | |||| || || ||    || || |  || || |  |||||||| || || |||||  | ||||| ||||| |||| ||||||| ||||||||||||||||   |  | | |  | |  ||   |  | |    ||    || | |  |    |   ||   | | |   ||   ||  |     || ||          
CAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCgtgtgagtccatcactactccgatatatatatatatattctgttataagctctgctgcgctaaattcgcaataaattgttcttgtttttggtaggatttc-------

upper sequence: PP1S133_46V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT4G04260.1 (Arabidopsis thaliana), 5'ss of exon 1
AAAACCACACAAAACTGGAAAGCGTTGGTACTGAAGACTATTTCTGTCGCTTCGAATACAAAGCTTCCACTGGCGCGTTCAGTCCTGATCGAGTTGCCGTgtgagtaattttccaattagtttaatcagttcagagtagggagttgtattttattggttttatacttaggagtcactggctacaaagtatccagtatcat
||||| |||| |  || ||||  |||||    ||||| |||| ||||   || || || |||||| | ||||||||||| | ||||||||||||||| ||||||||   |    | | |  | || ||   |    |     || || ||  || |  |||  | |||        ||| |    |  |           
AAAACTACACGAGGCTTGAAAATGTTGGAGTGGAAGATTATTACTGTATATTTGACTATAAAGCTGCTACTGGCGCGTTTACTCCTGATCGAGTTGCTGTgtgagtggatacatagtaa--tgaaacatgcctttttctcctgtagt-ttacatagagttttgatttatcttcttttggattttgataaag---------