1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTATCAATTGTGGAATTTCTTCGTTGAGTAATGTCGCCTACTCTATGGATGACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAGgttcgccctctttgctcactataattgaagtggtttttagacatcgtagctgtttatgaaatcaaatgctatacaggaatgattaatggagatcgaactcgcggaattgcgtgatgcttgctatacag
species | Physcomitrella patens |
transcript | PP1S130_226V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAG TGACGGGAGGGCGGAAAGATTGGCGATTCTACGCAATTACGTCGGCGGCAAEST: gi|162159319|gb|FC334626.1|FC334626
genomic: GACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAGgttcgccctc ... tgctatacagTGACGGGAGGGCGGAAAGATTGGCGATTCTACGCAATTACGTCGGCGGCAA
EST: GACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAG TGACGGGAGGGCGGAAAGATTGGCGATTCTACGCAATTACGTCGGCGGCAAEST: gi|100390071|gb|BY989151.1|BY989151
genomic: GACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAGgttcgccctc ... tgctatacagTGACGGGAGGGCGGAAAGATTGGCGATTCTACGCAATTACGTCGGCGGCAA
EST: GACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAG TGACGGGAGGGCGGAAAGATTGGCGATTCTACGCAATTACGTCGGCGGCAA
genomic: GACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAGgttcgccctc ... tgctatacagTGACGGGAGGGCGGAAAGATTGGCGATTCTACGCAATTACGTCGGCGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATCAATTGTGGAATTTCTTCGTTGAGTAATGTCGCCTACTCTATGGATGACAGGGAACCTGAAGGAGGATGCAAGTCGCGGGCATTTGACAATCACAGgttcgccctctttgctcactataattgaagtggtttttagacatcgtagctgtttatgaaatcaaatgctatacaggaatgattaatggagatcgaactcgcggaattgcgtgatgcttgctatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG