1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCGCGGATGCCGATTTTGTGCAGTTGCGACTAGTAGAAATCCTGCACCCGCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAGTTGGGGgtattcaattattccttcattttttcaatgcgttcttttgatgctgtgcatacggagttgaacatcactcgcctccccgcttgagtttagagtgctacat...
species | Physcomitrella patens |
transcript | PP1S12_246V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAGTTGGGG CGTAGGGTATGTTGTATTGACTAGCGTTGEST: gi|162196790|gb|FC373871.1|FC373871
genomic: GCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAGTTGGGGgtattcaatt ... tattgtgcagCGTAGGGTATGTTGTATTGACTAGCGTTG
EST: GCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAGTTGGGG CGTAGGGTATGTTGTATTGACTAGCGTTGACAGAGATGACATGCCTGATGGEST: gi|162167643|gb|FC343762.1|FC343762
genomic: GCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAGTTGGGGgtattcaatt ... tattgtgcagCGTAGGGTATGTTGTATTGACTAGCGTTGACAGAGATGACATGCCTGATGG
EST: GCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAG--G--- --TA---T--GTTGTATTGACTAGCGTTGACAGAGATGACATGCCTGATGG
genomic: GCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAGTTGGGGgtattcaatt ... tattgtgcagCGTAGGGTATGTTGTATTGACTAGCGTTGACAGAGATGACATGCCTGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCGGATGCCGATTTTGTGCAGTTGCGACTAGTAGAAATCCTGCACCCGCGGATCCTATGGAACCAGAAAATACAGCTCGGGCAATAGCCAGTTGGGGgtattcaattattccttcattttttcaatgcgttcttttgatgctgtgcatacggagttgaacatcactcgcctccccgcttgagtttagagtgctacat
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