1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAGgtgcgtgtgcaggtcttgatttattttatattttatatgtttttttccttttcacttttagcaatcaagttgtttgacctgcagtcttaaggattattct...
species | Physcomitrella patens |
transcript | PP1S126_196V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAG GTTCTCAGACGTCTGGCACAAAATCGTGAAGCAGCCCGAAAAAGCAGGCTTEST: gi|100362435|gb|BY947355.1|BY947355
genomic: GCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAGgtgcgtgtgc ... tgtggtatagGTTCTCAGACGTCTGGCACAAAATCGTGAAGCAGCCCGAAAAAGCAGGCTT
EST: GCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAG GTTCTCAGACGTCTGGCACAAAATCGTGAAGCAGCCCGAAAAAGCAGGCTTEST: gi|208372398|gb|DC936500.1|DC936500
genomic: GCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAGgtgcgtgtgc ... tgtggtatagGTTCTCAGACGTCTGGCACAAAATCGTGAAGCAGCCCGAAAAAGCAGGCTT
EST: GCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAG GTTCTCAGACGTCTGGCACAAAATCGTGAAGCAGCCCGAAAAAGCAGGCTT
genomic: GCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAGgtgcgtgtgc ... tgtggtatagGTTCTCAGACGTCTGGCACAAAATCGTGAAGCAGCCCGAAAAAGCAGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAGgtgcgtgtgcaggtcttgatttattttatattttatatgtttttttccttttcacttttagcaatcaagttgtttgacctgcagtcttaaggattattct
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC