1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGATGGAGATTATCCGGCAAGGAGCGCAGGAGGAGGCATTGGTTCTCTATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgagtcatacctcgtcgaatctttttcctgcaccttgtaaatttcttactagcttgcgtggattccaattcggagaactcgttcaattttccacatgcag
species | Physcomitrella patens |
transcript | PP1S123_99V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAGAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGEST: gi|100389507|gb|BY988985.1|BY988985
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
EST: TACGCTCGCCGAAACCACAA-TGGCAGAAGCTGCTCAGAAAGCTTGCGAG ATGCTTCATGTGCCGCAEST: gi|208399111|gb|DC904520.1|DC904520
genomic: TACGCTCGCCGAC-CCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCA
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAGAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGEST: gi|208361876|gb|DC953926.1|DC953926
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTGEST: gi|208368590|gb|DC936029.1|DC936029
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
EST: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAG ATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
genomic: ATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgag ... ccacatgcagATGCTTCATGTGCCGCACGTCAACGTCCTGGGGCCGATCACCGACGCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATGGAGATTATCCGGCAAGGAGCGCAGGAGGAGGCATTGGTTCTCTATACGCTCGCCGACCCACAAATGGCAGAGGCTGCTCAGAAAGCTTGCGAGgtatcatgagtcatacctcgtcgaatctttttcctgcaccttgtaaatttcttactagcttgcgtggattccaattcggagaactcgttcaattttccacatgcag
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