Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTCGGAACAGTTGGGGCGCTTAGTCTGTCGGTCATTTCCTCGGTGGCCATCGTTATTTGCAACAAGACGCTCATCACTACGCTCGGTTTCTGCTTCGgtacgaggaattcctcggatatgtgttccctggcttctgtctactttcttaaaaaccagatctcgaagttatctagtaatttgctggttctttgaggaga...

Basic information

species Physcomitrella patens
transcript PP1S123_22V6.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S123_22V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ20116 (Selaginella moellendorffii), 5'ss of exon 1
GGTCTCGGAACAGTTGGGGCGCTTAGTCTGTCGGTCATTTCCTCGGTGGCCATCGTTATTTGCAACAAGACGCTCATCACTACGCTCGGTTTCTGCTTCGgtacgaggaattcctcggatatgtgttccctggcttctgtctactttcttaaaaaccagatctcgaagttatctagtaatttgctggttctttgaggaga
    |||| || || || |||||  | || ||||| || || || |||||||| || |||||||||||| |||||||||||||||| || ||   ||| |||| | | | || |||   | |   |    |    | ||| | |||||||        |   || ||  | ||| |||   |   |||  | | |     
CAGATCGGCACGGTGGGAGCGCTCGGCCTCTCGGTGATATCATCCGTGGCCATTGTAATTTGCAACAAGGCGCTCATCACTACGCTGGGATTTAACTTTGgtaagtgca-ttgctcttttgttcttggatttctctttgtgttctttctttcctctgtgtgttctaatctttctcgtacaatctgggtggtatcacag--

upper sequence: PP1S123_22V6.2 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ14247 (Selaginella moellendorffii), 5'ss of exon 1
GGTCTCGGAACAGTTGGGGCGCTTAGTCTGTCGGTCATTTCCTCGGTGGCCATCGTTATTTGCAACAAGACGCTCATCACTACGCTCGGTTTCTGCTTCGgtacgaggaattcctcggatatgtgttccctggcttctgtctactttcttaaaaaccagatctcgaagttatctagtaatttgctggttctttgaggaga
    |||| || || || |||||  | || ||||| || || || |||||||| || |||||||||||| |||||||||||||||| || ||   ||| ||||   | | | | |        |||||   |  |||| | | || | |       |  ||||     || ||    ||| ||   | | |   ||    
CAGATCGGCACGGTGGGAGCGCTCGGCCTCTCGGTGATATCATCCGTGGCCATTGTAATTTGCAACAAGGCGCTCATCACTACGCTGGGATTTAACTTTGgtaactgcattgcttt-------tgttcttggatttctctttcctctgt--gtgttctaatct-----ttctcgtacaatctgggtggtatcacag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571021|gb|BJ943845.1|BJ943845
EST:     CATCGTTATTTGCAACAAGACGCTCATCACTACGCTCGGTTTCTGCTTCG                         TGTTACTGGAAACAGTTTTCTTCAGGAAACGCTTCAG
genomic: CATCGTTATTTGCAACAAGACGCTCATCACTACGCTCGGTTTCTGCTTCGgtacgaggaa ... ccatgcacagTGTTACTGGAAACAGTTTTCTTCAGGAAACGCTTCAG