Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagcccattctaactcccatcacttgctgcgttcagtgaatttcaatcaacaagataattttcattttatataatctccaactcatgtgaagtttgaacatctgcag

Basic information

species Physcomitrella patens
transcript PP1S122_100V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208372205|gb|DC948008.1|DC948008
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|67571025|gb|BJ943849.1|BJ943849
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162231154|gb|FC406460.1|FC406460
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162178580|gb|FC355032.1|FC355032
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162229186|gb|FC404545.1|FC404545
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37835778|gb|BJ593790.1|BJ593790
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|67694331|gb|BJ954564.1|BJ954564
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162166454|gb|FC342436.1|FC342436
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|19790120|gb|BQ041642.1|BQ041642
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37851849|gb|BJ609857.1|BJ609857
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162262162|gb|FC437398.1|FC437398
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|67573722|gb|BJ946546.1|BJ946546
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162274723|gb|FC450490.1|FC450490
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37826546|gb|BJ584558.1|BJ584558
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37827511|gb|BJ585523.1|BJ585523
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162259724|gb|FC436535.1|FC436535
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162261048|gb|FC437442.1|FC437442
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|67704530|gb|BJ964763.1|BJ964763
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37843860|gb|BJ601868.1|BJ601868
EST:     CGAGGACGATGGTGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGGAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162259002|gb|FC435945.1|FC435945
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162240554|gb|FC416042.1|FC416042
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18367132|gb|BJ199213.1|BJ199213
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162178579|gb|FC355031.1|FC355031
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162204794|gb|FC381463.1|FC381463
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18348222|gb|BJ180269.1|BJ180269
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|208357849|gb|DC902345.1|DC902345
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37847583|gb|BJ605591.1|BJ605591
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18352761|gb|BJ184816.1|BJ184816
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGATAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162242129|gb|FC418410.1|FC418410
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162248336|gb|FC422551.1|FC422551
EST:     TGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: TGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162259725|gb|FC436536.1|FC436536
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18354308|gb|BJ186364.1|BJ186364
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|208398694|gb|DC916217.1|DC916217
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37850592|gb|BJ608600.1|BJ608600
EST:     CGAGGNCGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|208394200|gb|DC933868.1|DC933868
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37827604|gb|BJ585616.1|BJ585616
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162225855|gb|FC402147.1|FC402147
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162229187|gb|FC404546.1|FC404546
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37822776|gb|BJ580842.1|BJ580842
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37834191|gb|BJ592203.1|BJ592203
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGATAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18333341|gb|BJ165355.1|BJ165355
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162242128|gb|FC418409.1|FC418409
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18373362|gb|BJ204940.1|BJ204940
EST:     CGAGGACGATGGTGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGGAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18348311|gb|BJ180358.1|BJ180358
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162275674|gb|FC451663.1|FC451663
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18371666|gb|BJ203268.1|BJ203268
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGANCCGTGGTGAGAAG
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAG
EST: gi|18347349|gb|BJ179395.1|BJ179395
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|18369328|gb|BJ201414.1|BJ201414
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162226801|gb|FC402807.1|FC402807
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162265208|gb|FC441295.1|FC441295
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|67697110|gb|BJ957343.1|BJ957343
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|37826398|gb|BJ584410.1|BJ584410
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162166453|gb|FC342435.1|FC342435
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|67703937|gb|BJ964170.1|BJ964170
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
EST: gi|162265656|gb|FC441619.1|FC441619
EST:     CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAG                         GCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA
genomic: CGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 99

TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagc ... acatctgcagGCGAAGACGGTCTGACTGCAGGTAAGTCAAAGCAGAGCCGTGGTGAGAAGAAGAGCAGGAAGGCCATGCAAAAGCTTGGCATGAAACCAGTCCCCGGCGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGACGATCCCATCATTGAGGATGCGAAGGACAGTGATGACGAGGACGATGATGAGGGCGACGATGACGACGTCGCTGATGGAGAGGAAGgtgaagaagcccattctaactcccatcacttgctgcgttcagtgaatttcaatcaacaagataattttcattttatataatctccaactcatgtgaagtttgaacatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
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