1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttacgaactcattgacctaccgagactggtgtacagcgtctcaggttttttgtaaatatatgtatgtactctttgactgctgccttttggacaa...
species | Physcomitrella patens |
transcript | PP1S120_164V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAG GAAGAAGACTTAAAGCAGTTTAGGCEST: gi|100446557|gb|CJ970856.1|CJ970856
genomic: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttac ... gtgttctcagGAAGAAGACTTAAAGCAGTTTAGGC
EST: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAG GAANAANACTTAAAGCAGTTTAGGCAGTGGGGAAGCANAACCCCTGGGCACEST: gi|100442191|gb|BY963084.1|BY963084
genomic: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttac ... gtgttctcagGAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCAC
EST: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAG GAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCACEST: gi|18368720|gb|BJ200805.1|BJ200805
genomic: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttac ... gtgttctcagGAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCAC
EST: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAG GAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCACEST: gi|100404862|gb|BY991318.1|BY991318
genomic: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttac ... gtgttctcagGAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCAC
EST: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAG GAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCACEST: gi|100443241|gb|BY963537.1|BY963537
genomic: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttac ... gtgttctcagGAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCAC
EST: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAG GAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGGACCCCTGGGCAC
genomic: GCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttac ... gtgttctcagGAAGAAGACTTAAAGCAGTTTAGGCAGTGGGGAAGCAGAACCCCTGGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCATGCTCCAGTACGCTCTCCTCCACCTCGCTGGGTACGACAGTGTTCAGgtatgtttacgaactcattgacctaccgagactggtgtacagcgtctcaggttttttgtaaatatatgtatgtactctttgactgctgccttttggacaa
- - - - - - - - - - CTCCTC