1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGTAAGTGCTCATGAGAGGGTATCCTTAAGGTACACGCAATGGCGCACCTCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagagaaacttctcattcaagttctttggtactttatccgcttgttgcagttaaacctagggtgtggttattttaccaatgtgccgtatgagagcatggtttgggtatgatggcaagtcttgttgtcagcatctgaagcgttcctgagtggggactgactgaccaatcagcag
species | Physcomitrella patens |
transcript | PP1S11_305V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAG GGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTCEST: gi|18345221|gb|BJ177262.1|BJ177262
genomic: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagaga ... caatcagcagGGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
EST: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAG GGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTCEST: gi|18367520|gb|BJ199603.1|BJ199603
genomic: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagaga ... caatcagcagGGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
EST: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAG GGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTCEST: gi|162226063|gb|FC401029.1|FC401029
genomic: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagaga ... caatcagcagGGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
EST: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAG GGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTCEST: gi|100403883|gb|BY955149.1|BY955149
genomic: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagaga ... caatcagcagGGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
EST: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAG GGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTCEST: gi|18355804|gb|BJ187863.1|BJ187863
genomic: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagaga ... caatcagcagGGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
EST: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAG GGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTCEST: gi|100393437|gb|BY953399.1|BY953399
genomic: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagaga ... caatcagcagGGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
EST: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAG GGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
genomic: TCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagaga ... caatcagcagGGACGTCTCGCCTACATCCTCTGAATTGAAGCAGAATGAAGGGGAGCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTAAGTGCTCATGAGAGGGTATCCTTAAGGTACACGCAATGGCGCACCTCTCTATCGAACGTTGTGGGGTGCCGAGCGGTTATGTCAGCTGAGAACAGgtgagagagaaacttctcattcaagttctttggtactttatccgcttgttgcagttaaacctagggtgtggttattttaccaatgtgccgtatgagagcatggtttgggtatgatggcaagtcttgttgtcagcatctgaagcgttcctgagtggggactgactgaccaatcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA