1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatctgttttcgactagtttgccgaattgattgacgtgagaggttgtggatgcctcgtctcttctcagtggtggaactttgtatgactttgggat...
species | Physcomitrella patens |
transcript | PP1S11_173V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162206553|gb|FC382922.1|FC382922
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|18363812|gb|BJ195884.1|BJ195884
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|37821482|gb|BJ579548.1|BJ579548
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|67570735|gb|BJ943559.1|BJ943559
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCEST: gi|67694029|gb|BJ954262.1|BJ954262
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCC
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162227524|gb|FC403466.1|FC403466
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162209025|gb|FC385577.1|FC385577
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162275286|gb|FC451262.1|FC451262
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|37834457|gb|BJ592469.1|BJ592469
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162230791|gb|FC406422.1|FC406422
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|37840975|gb|BJ598983.1|BJ598983
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162209026|gb|FC385578.1|FC385578
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|67700234|gb|BJ960467.1|BJ960467
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162230790|gb|FC406421.1|FC406421
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|18342355|gb|BJ174390.1|BJ174390
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162227523|gb|FC403465.1|FC403465
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162259014|gb|FC435125.1|FC435125
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|162259015|gb|FC435126.1|FC435126
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTTEST: gi|208391789|gb|DC937979.1|DC937979
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
EST: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG TGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
genomic: TCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatct ... ctttttccagTGTGAATAATATGCACCCCAAGACTAGGAAGACCATGCAATTGTTGCGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGGgtaagaatctgttttcgactagtttgccgaattgattgacgtgagaggttgtggatgcctcgtctcttctcagtggtggaactttgtatgactttgggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT