Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaacttgtacaattcgggatgtaccgtatggtttttgttcatatatgcagttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag

Basic information

species Physcomitrella patens
transcript PP1S118_166V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
----CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaaga---aacttgtacaatt-cgggatgtaccgtatggtttttgttcatatat-gcagttttttctatgtagtggtggcttttgctg-gttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
    ||||||||||||| || || || |||||||| || || ||||| || || |||||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||   ||  || | | || |    ||| |  | || || ||  |   ||||   | ||   |  |  || |  |  ||     ||  ||||||||||                                                                                         
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag-----------------------------------------------------------------------------------------

upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os06g45820.1 (Oryza sativa), 5'ss of exon 3
CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaaga---aacttgtacaatt-cgggatgtaccgtatggtttttgttcatatat-gcagttttttctatgtagtggtggcttttgctg-gttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
||||||||||||| || || || |||||||| || || ||||| || || |||||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||   ||  || | | || |    ||| |  | || || ||  |   ||||   | ||   |  |  || |  |  ||     ||  ||||||||||                                                                                         
CAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtag-----------------------------------------------------------------------------------------

upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os06g45820.3 (Oryza sativa), 5'ss of exon 3
----------------------------------------CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaaga---aacttgtacaatt-cgggatgtaccgtatggtttttgttcatatatgcagttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
                                        ||||||||||||| || || || |||||||| || || ||||| || || |||||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||   ||  || | | || |    ||| |  | || || ||  |   ||||  |  ||   |  || |    |   | |  ||||   | | |  || | | |||| ||| |      |   ||   |  |||||                                                 
CGTGGTCGGACAGCAATTTCCTCAAAGGAGATTGATGATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAgtcttgttgcttaccatgaagttgggcatgcaatttgtgggtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaatt---ccgtgcaactattcatat--ctggaaatgtattctttgtagaactttgacgcctggccacgaccctgtccaaaag------------------------------------------------

upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G087598_T02 (Zea mays), 5'ss of exon 2
CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaacttgtacaattcgggatgtaccgtatggtttttgttcatatat-gcagttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
| ||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||| || ||||| || ||||||||||| |    |     ||       | | | |   ||||||    | || | | | |  |     || |   || |||   |||||  |   |  |                                                                                       
CTATTGACAGAATTGTAGCTGGTATGGAAGGGACCGTGATGACAGACGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGCGGgtaagagatggatcttcctctttgcagagcttctttcttttgtcttaacattggaatgtgattgggttaatttaggttttgattggtttctcagatattc-------------------------------------------------------------------------------------

upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G110408_T01 (Zea mays), 5'ss of exon 3
CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaacttgtacaattcgggatgtaccgtatggtttttgt-tcatatat-gcagttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
| ||||||||||| || || || |||||||| || || ||||| ||||| |||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||| |    |     ||   |   | | | |    ||||  |   | ||   | | |  |   | || |  ||| ||    |||||  |   |  |                                                                                       
CTATTGACAGAATTGTGGCTGGTATGGAAGGGACTGTGATGACAGACGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTCGGGCATGCAATTTGCGGgtaagagatgaatcttcctcttaacagatcttttctcctttgccttgaacattagaatgtgattggtttaattttggtttcgattggtttctcagatatc--------------------------------------------------------------------------------------

upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT1G06430.1 (Arabidopsis thaliana), 5'ss of exon 3
CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaacttgtacaattcgggatgtaccgtatggtttttgttcatatatgcagttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
||||||||||||| || || || |||||||| || |||||||| || || |||||||| ||  | ||||| ||||| ||||| |||||||| || || |||||||  |        | || |  |  |   | ||   | ||||   | | ||     |||   |  | || | | | |||| |                                                                                                    
CAATTGACAGAATTGTAGCTGGCATGGAAGGAACAGTCATGACAGATGGGAAGAGCAAAAGCTTGGTTGCTTACCATGAAGTTGGCCATGCCATATGTGGgtaagtca-------gaatcagattagatgatgtg---tgtgttatcaaaagcctaaatttaagttcattgttcgttcttgcag----------------------------------------------------------------------------------------------------

upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ19987 (Selaginella moellendorffii), 5'ss of exon 2
CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaacttgtacaattcgggatgtaccgtatggtttttgttcatatatgcag-ttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
| || ||||||||||| || || |||||||| ||    ||||| |||||||| |  ||||| |||||||| || |||||||| || |||||| | |||||||||||   |||  || ||  |   ||  | | |||  |    | |   | ||||  |||| || | ||                                                                                                                    
CTATCGACAGAATCGTCGCGGGAATGGAAGGAACTACGATGACCGACGGCAAAACTAAGAGCCTTGTTGCTTATCACGAAGTTGGACATGCTGTGTGCGGgtaaga---ttgctcacttttgttcgtttc-tttggcatcaaat-actgacgcaggcttttcctgtttaacaag---------------------------------------------------------------------------------------------------------------

upper sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ14195 (Selaginella moellendorffii), 5'ss of exon 2
CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaacttgtacaattcgggatgtaccgtatggtttttgttcatatatgcag-ttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag
| || ||||||||||| || || |||||||| ||    ||||| |||||||| |  ||||| |||||||| || |||||||| || |||||| | |||||||||||   |||  || ||  |   ||  | | |||  |    | |   | ||||  |||| || | ||                                                                                                                    
CTATCGACAGAATCGTCGCGGGAATGGAAGGAACTACGATGACCGACGGCAAAACTAAGAGCCTTGTTGCTTATCACGAAGTTGGACATGCTGTGTGCGGgtaaga---ttggtcacttttgttcgtttc-tttggcatcaaat-actgacgcaggcttttcctgtttaacaag---------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162211064|gb|FC387088.1|FC387088
EST:     AGAGCAAGAGTC-TGTTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AGAGCAAGAGTCTTG-TTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162275381|gb|FC451565.1|FC451565
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162165386|gb|FC340848.1|FC340848
EST:     CCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: CCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162180630|gb|FC356987.1|FC356987
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162187826|gb|FC364400.1|FC364400
EST:     CATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: CATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162190966|gb|FC368372.1|FC368372
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162168629|gb|FC343891.1|FC343891
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|37845186|gb|BJ603194.1|BJ603194
EST:     GCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: GCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162169712|gb|FC345249.1|FC345249
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162152470|gb|FC328033.1|FC328033
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162161676|gb|FC339091.1|FC339091
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162274885|gb|FC451120.1|FC451120
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|100427420|gb|BY977488.1|BY977488
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162196002|gb|FC372693.1|FC372693
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162164619|gb|FC341914.1|FC341914
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162150724|gb|FC327620.1|FC327620
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162184673|gb|FC361911.1|FC361911
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162164618|gb|FC341913.1|FC341913
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162189227|gb|FC366736.1|FC366736
EST:     CCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: CCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162190357|gb|FC365371.1|FC365371
EST:     TGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCGGTGCAAAAGGTCACCCTCATTCCTAG
genomic: TGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162191703|gb|FC367436.1|FC367436
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162211065|gb|FC387089.1|FC387089
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162172403|gb|FC349072.1|FC349072
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162150060|gb|FC326591.1|FC326591
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGC
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGC
EST: gi|162175125|gb|FC351986.1|FC351986
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162196664|gb|FC373810.1|FC373810
EST:     CGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: CGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162178139|gb|FC354857.1|FC354857
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|100390222|gb|BY952630.1|BY952630
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162175126|gb|FC351987.1|FC351987
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162166870|gb|FC343047.1|FC343047
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162196665|gb|FC373811.1|FC373811
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162150525|gb|FC326173.1|FC326173
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
EST: gi|162186760|gb|FC362796.1|FC362796
EST:     AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGG                         GACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG
genomic: AAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 43

CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaact ... ttctgtgcagGACTTTGACTCCCGGACACGACGCCGTGCAAAAGGTCACCCTCATTCCTAGAGGTCAGGCCCGTGGTCTCACCTGGTTTATTCCCGGAGAAGACCCGACT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATTGACAGAATCGTTGCCGGGATGGAAGGTACCGTCATGACGGACGGCAAGAGCAAGAGTCTTGTTGCATACCACGAAGTCGGCCATGCTATCTGCGGgtaagaaacttgtacaattcgggatgtaccgtatggtttttgttcatatatgcagttttttctatgtagtggtggcttttgctggttctttgtagttggaataactgtgaagtgatatcttcacttaggtcaaaaccatttgatttctgtttgctgaagtgtatgtactgtgtattctgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA