1 5' 3' | 2 5' 3' | 3 5' 3' |
ACACTGGTGTATTGGCTGCTGTGAGTGTATTTCATGAAATGCAGCAGTTTGGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAGgtaagtggtattacgtcgattgagccccattaaccttcgactttccaataatgttcttatggcattatttcgtgaccgacttggttgtggttcattgcag
species | Physcomitrella patens |
transcript | PP1S116_71V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAG TCGATGCTCTTCATTGCAAGAGGCATCTGTTTTEST: gi|100388681|gb|BY970829.1|BY970829
genomic: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAGgtaagtggta ... ttcattgcagTCGATGCTCTTCATTGCAAGAGGCATCTGTTTT
EST: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAG TCGATGCTCTTCATTGCAAGAGGCATCTGTTTTGCTGGAGCAGATGCGATTEST: gi|100438317|gb|BY979896.1|BY979896
genomic: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAGgtaagtggta ... ttcattgcagTCGATGCTCTTCATTGCAAGAGGCATCTGTTTTGCTGGAGCAGATGCGATT
EST: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAG TCGATGCTCTTCATTGCAAAGAG-CATCTGTTTTGCTGGAGCAGATGCGATEST: gi|100362114|gb|BY966339.1|BY966339
genomic: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAGgtaagtggta ... ttcattgcagTCGATGCTCTTCATTGCAA-GAGGCATCTGTTTTGCTGGAGCAGATGCGAT
EST: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAG TCGATGCTCTTCATTGCAAGAGGCATCTGTTTTGCTGGAGCAGATGCGATT
genomic: GGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAGgtaagtggta ... ttcattgcagTCGATGCTCTTCATTGCAAGAGGCATCTGTTTTGCTGGAGCAGATGCGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTGGTGTATTGGCTGCTGTGAGTGTATTTCATGAAATGCAGCAGTTTGGGTTGAAACCAAATGTTGTCACGTTTTCCGCAATCCTGAACGCCTGCAGgtaagtggtattacgtcgattgagccccattaaccttcgactttccaataatgttcttatggcattatttcgtgaccgacttggttgtggttcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG