1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTTGATGAGGCTGTAAATGATGATAATTCTGTTGTAGCTTTAAACATGGAGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatcttattatccttcatgtgaattgtccgcttgtaaccttaacattcacctcaaaaactatgttcgttagattgtattaattgagcttgtggatgtttttaaaccaacagagtgctatatttttttatatctaattttatcagaatttattgtgttttgcag
species | Physcomitrella patens |
transcript | PP1S115_6V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGTEST: gi|18329743|gb|BJ161749.1|BJ161749
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
EST: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGTEST: gi|67573981|gb|BJ946805.1|BJ946805
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
EST: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGTEST: gi|18354701|gb|BJ186759.1|BJ186759
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
EST: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGTEST: gi|100378097|gb|BY949679.1|BY949679
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
EST: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGTEST: gi|18344722|gb|BJ176763.1|BJ176763
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
EST: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGTEST: gi|162255688|gb|FC431686.1|FC431686
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
EST: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGTEST: gi|18348840|gb|BJ180889.1|BJ180889
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
EST: AGGTCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAG GGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
genomic: AGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatctta ... tgttttgcagGGCAAGAAACGCAAAGATACTGTGTGCATCGTCTTAGCAGACGATACCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGATGAGGCTGTAAATGATGATAATTCTGTTGTAGCTTTAAACATGGAGATCATGGAAAAGCTTCAGCTTTTTCGTGGAGATACTGTGCTGATCAAGgtttatcttattatccttcatgtgaattgtccgcttgtaaccttaacattcacctcaaaaactatgttcgttagattgtattaattgagcttgtggatgtttttaaaccaacagagtgctatatttttttatatctaattttatcagaatttattgtgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT