1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGGGACAGTCGGGTTTCCTATTCTCAAGATCGGCACATCTTCCACATTATGAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcctttccttaccttctgccatttttcgttttcttcttctgcacattaatttgagaacccggatttcgaacgccaatttcaaccttggatgcaattttgaagtggaatggctttgaaaagcttcggctagcggccagaggaacgctaatagttttattcttttctatttttatcgaacatggcag
species | Physcomitrella patens |
transcript | PP1S115_125V6.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAAEST: gi|100393349|gb|BY989833.1|BY989833
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAAEST: gi|100423894|gb|BY976578.1|BY976578
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGACAGTCGGGTTTCCTATTCTCAAGATCGGCACATCTTCCACATTATGAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcctttccttaccttctgccatttttcgttttcttcttctgcacattaatttgagaacccggatttcgaacgccaatttcaaccttggatgcaattttgaagtggaatggctttgaaaagcttcggctagcggccagaggaacgctaatagttttattcttttctatttttatcgaacatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT