1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACACTGGCAGTGACGACCACTGTGTACCCGATAGTGTCAAAGAATCGGACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctattttgttggcggtgaatcgtcctttatcccacgttgatgatttttgcgggtgttcgcgtttacatgcaatcgctaatactatttgctgtgtgacttttgctaattgggaatgattttaacctggtcattcttttgaacag
species | Physcomitrella patens |
transcript | PP1S114_207V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAG TGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGCEST: gi|162159953|gb|FC336206.1|FC336206
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
EST: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAG TGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGCEST: gi|208393602|gb|DC904318.1|DC904318
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
EST: ACGTCTCTCCGCAGGAGAATTACNTCCTCGATGAATTGCTCCTCGCACAG TGGGAAGATCGTATGGCTCGEST: gi|162159109|gb|FC334280.1|FC334280
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCG
EST: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAG TGGGAGGATCGTATGGCTCGTGGACTTTTCCGNTATGACGTGACAGCCTGCEST: gi|162170578|gb|FC347074.1|FC347074
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
EST: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAG TGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGCEST: gi|100376965|gb|BY949552.1|BY949552
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
EST: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAG TGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGCEST: gi|67568739|gb|BJ941563.1|BJ941563
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
EST: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAG TGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGCEST: gi|162197171|gb|FC374161.1|FC374161
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
EST: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAG TGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
genomic: ACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctat ... ttttgaacagTGGGAGGATCGTATGGCTCGTGGACTTTTCCGTTATGACGTGACAGCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACACTGGCAGTGACGACCACTGTGTACCCGATAGTGTCAAAGAATCGGACGTCTCTCCGCAGGAGAATTACTTCCTCGATGAATTGCTCCTCGCACAGgtggggctattttgttggcggtgaatcgtcctttatcccacgttgatgatttttgcgggtgttcgcgtttacatgcaatcgctaatactatttgctgtgtgacttttgctaattgggaatgattttaacctggtcattcttttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC