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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag

Basic information

species Physcomitrella patens
transcript PP1S114_146V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 2
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatggg-cgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| || |||||||| |||||||| ||||||||||||||||| || || |||   |||||||||||||||||||| ||||||||||||||||||||    | | || ||  |    ||   | ||  |  |      |   |    ||   |   |    |                  |       | | ||||                                                     
AGATCATGGCTGTCCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgta--ccaccgtccaattcccaattcctttcagttgcgcacttcaattgtccaattcacttttttttcaatcaccctcaccctcttatatgcaaatgcttat-----------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 2
--------------------------AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgc-atgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
                          || | ||||| ||||||||||| |||||||| ||||||||||||||||| || || |||   |||||||| ||||||||||| || |||||||||||||||||      | |    | |||   | ||   || |     | |   |       |   ||  ||  |   ||                                                                                   
GATGCACGGCCGCAACAACGGGAAGAAGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATTCAGgtcatcgtcgacgccatcatcaacaggtaaccccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttaccgggatttgttagaac---------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g29190.5 (Oryza sativa), 5'ss of exon 2
-----------------------------------------AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
                                         || | ||||| ||||||||||| |||||||| ||||||||||||||||| || || |||   |||||||| ||||||||||| || |||||||||||||||||      | |    | |||   | ||   || |     | |   |       |   |                                                                                               
GACCAACTCGCTCATGATGCACGGCCGCAACAACGGGAAGAAGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACgccaaccccattcaggtcatcgtcgacgccatcatcaacaggtaaccccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttacc-----------------------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g29190.1 (Oryza sativa), 5'ss of exon 2
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| ||||||||||| |||||||| ||||||||||||||||| || || |||   |||||||| ||||||||||| || |||||||||||||||||      | |    | |||   | ||   || |     | |   |       |   ||   ||    |     |     || |  |||||||    | ||  | ||                                              
AGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATTCAGGTCATCGTCGACGCCATCATCAACAGgtaaccccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttaccg---ggatttgttagaacaccaca-cgagaattta----tctg-agaata---------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G078985_T01 (Zea mays), 5'ss of exon 2
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| || |||||| |||||||| |  ||||||||||||||||||| || |||   || |||||||||||  ||||||| ||||| |||||||||||   || || |  | | |||    |  ||     |         |   | || | |           ||   |  |||  ||   |   |     | |  || |||  ||                                         
AGGTCATGGCCGTCCGCATCATGAAGCACACCCTGGAGATCATCCACCTGCTCACTGACGCCAATCCCATCCAGGTGGTCGTGGACGCCATTATCAACAGgta--ctaccttgctctcctgt----cctcactcccgat-------ctctgtattgtcaggctaataacagctaaacttgttactttatgctgatactttttggaatgcggta----------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G156673_T02 (Zea mays), 5'ss of exon 1
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggt-tatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| || |||||| | |||||  |  ||||||||||||||||||| || ||    ||||||||||||||| |||| || || ||||||||||||||   | |      |   |  | | |   | |       |  |       | ||    |||   | | | |   | |  |  |  |||    | || |||                                                     
AGGTCATGGCTGTCCGCATCATCAAGCATACCCTGGAGATCATCCACCTGCTCACCGATGCCAACCCCATCCAGGTCGTCGTCGACGCGATCATCAACAGgtacagtcttaatctcggctaataaccgttaaacctactcgttac-tatatgttgattccatt--cagtatgctggatccccccctgaaccgtgtgtgtattt---------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G26840.2 (Glycine max), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggtt---atctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggagga--gaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| ||  | ||  | ||||| || ||||||||||||||| |||| || |||| |||||| || |||||||| || |||||| ||||||| ||||| |||    | | ||  |||| |||   |   | |||  ||    |    ||| |         |  | |  |   | | | |   ||  ||||   |                                                          
AGCTCATGGCTGTCAGGATTATCAAGCATGCCATGGAGATCATCCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgttcgggtgttgagaacttcttttttt-tgtgttgatggatttgctttgggttttaattgcagatgagttgtttgtgctggtgtcatcaattgtaga---------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 4
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
           ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||  |      ||  |  | |        | |  ||||    |||    |  ||      |||||       |||| |||  || |  |    ||||     ||| || |||| || ||| |||| | ||||                     
-----------GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTGGTGGTGGATGCCATCATCAACAGgtgcg------cgtgctgtcgc-------cgtcatgggcacggagagaagtcat-----tatggg-------agagattggcacggaga----gggtg----ggggtggtgtgagggtcgagagcggcgaggg--------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtag-gttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|||||||||| | |||||| ||||||||||||||||||||||| ||| |||| || ||   ||| || |||||  |||||||||| |||||||||||||||||| | |||     | |  | ||| | | ||  ||    |      ||        ||     |                                                                                         
AGTTGATGGCTGGGCGCATTGTGAAGCACGCGATGGAGATCATTCACTTGCTCACAGATGCGAATCCGATCCAAATCATCGTGGACGCCATCATCAACAGgtagagctat-----agatctcttt-gttacaacttcattgatttttcgtccttcctgcttgcag-----------------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ18003 (Selaginella moellendorffii), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| ||||||| |  ||||| |||||||| || ||||||||||| ||| |||| ||||||   ||||| |||||  | || || ||||| ||||||||||||||       || |          ||| | || |   ||  ||    ||    |       |      |  |                                                                                 
AGCTGATGGCTGGTCGCATTGTGAAGCATGCAATGGAGATCATTCACTTGCTCACGGACGCCAACCCGATCCAAATTATTGTCGATGCTATCATCAACAGgtatagaggttcaagtg-------agcaggat-tccaggacagttttggattttctctctttctctttgcag---------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ37091 (Selaginella moellendorffii), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|||||||||| |  ||||| |||||||| || ||||||||||| ||| |||| ||||||   ||||| |||||  | || || ||||| ||||||||||||||       || |          ||| | || |   ||  ||    ||    |       |      |  |                                                                                 
AGTTGATGGCTGGTCGCATTGTGAAGCATGCAATGGAGATCATTCACTTGCTCACGGACGCCAACCCGATCCAAATTATTGTCGATGCTATCATCAACAGgtatagaggttcaagtg-------agcaggat-tccaggacagttttggattttctctctttctctttgcag---------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15727523|gb|BI740334.1|BI740334
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67698006|gb|BJ958239.1|BJ958239
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162221761|gb|FC397093.1|FC397093
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162221762|gb|FC397094.1|FC397094
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|208353030|gb|DC910123.1|DC910123
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162214167|gb|FC390213.1|FC390213
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18337436|gb|BJ169460.1|BJ169460
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162268602|gb|FC443656.1|FC443656
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67702029|gb|BJ962262.1|BJ962262
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCC
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCC
EST: gi|162217305|gb|FC392045.1|FC392045
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67704507|gb|BJ964740.1|BJ964740
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67725017|gb|BJ975276.1|BJ975276
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67710283|gb|BJ965946.1|BJ965946
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18365767|gb|BJ197844.1|BJ197844
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCA
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCA
EST: gi|67724208|gb|BJ974467.1|BJ974467
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18329586|gb|BJ161592.1|BJ161592
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67726813|gb|BJ977072.1|BJ977072
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162214166|gb|FC390212.1|FC390212
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18364886|gb|BJ196959.1|BJ196959
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|208396170|gb|DC923964.1|DC923964
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162259284|gb|FC436188.1|FC436188
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18347061|gb|BJ179107.1|BJ179107
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67726078|gb|BJ976337.1|BJ976337
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67702086|gb|BJ962319.1|BJ962319
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67716606|gb|BJ966866.1|BJ966866
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67717563|gb|BJ967822.1|BJ967822
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|22491782|gb|BU051705.1|BU051705
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162217307|gb|FC392047.1|FC392047
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67725126|gb|BJ975385.1|BJ975385
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67716500|gb|BJ966760.1|BJ966760
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18373479|gb|BJ205057.1|BJ205057
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGATCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18340238|gb|BJ172266.1|BJ172266
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|22491772|gb|BU051695.1|BU051695
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18360906|gb|BJ192970.1|BJ192970
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCA
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCA
EST: gi|67720521|gb|BJ970780.1|BJ970780
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162166350|gb|FC342943.1|FC342943
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|208389651|gb|DC938269.1|DC938269
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67703586|gb|BJ963819.1|BJ963819
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCG
EST: gi|67709628|gb|BJ965444.1|BJ965444
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162217308|gb|FC392048.1|FC392048
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67574589|gb|BJ947413.1|BJ947413
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162166351|gb|FC342944.1|FC342944
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|7648289|gb|AW739272.1|AW739272
EST:     CAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|18340778|gb|BJ172809.1|BJ172809
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|100364481|gb|BY984625.1|BY984625
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162259285|gb|FC436189.1|FC436189
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAACACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|37846219|gb|BJ604227.1|BJ604227
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67723703|gb|BJ973962.1|BJ973962
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 109

AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAGGCAGGCCGTGGATATTTCTCCATTGAGGAGGGTGAACCAGGCGATCTAC




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