Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag

Basic information

species Physcomitrella patens
transcript PP1S114_143V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 2
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatggg-cgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| || |||||||| |||||||| ||||||||||||||||| || || |||   |||||||||||||||||||| ||||||||||||||||||||    | | || ||  |    ||   | ||  |  |      |   |    ||   |   |    |                  |       | | ||||                                                     
AGATCATGGCTGTCCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATCCAGGTCATCGTAGATGCCATCATCAACAGgta--ccaccgtccaattcccaattcctttcagttgcgcacttcaattgtccaattcacttttttttcaatcaccctcaccctcttatatgcaaatgcttat-----------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 2
--------------------------AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgc-atgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
                          || | ||||| ||||||||||| |||||||| ||||||||||||||||| || || |||   |||||||| ||||||||||| || |||||||||||||||||      | |    | |||   | ||   || |     | |   |       |   ||  ||  |   ||                                                                                   
GATGCACGGCCGCAACAACGGGAAGAAGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATTCAGgtcatcgtcgacgccatcatcaacaggtaaccccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttaccgggatttgttagaac---------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g29190.5 (Oryza sativa), 5'ss of exon 2
-----------------------------------------AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
                                         || | ||||| ||||||||||| |||||||| ||||||||||||||||| || || |||   |||||||| ||||||||||| || |||||||||||||||||      | |    | |||   | ||   || |     | |   |       |   |                                                                                               
GACCAACTCGCTCATGATGCACGGCCGCAACAACGGGAAGAAGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACgccaaccccattcaggtcatcgtcgacgccatcatcaacaggtaaccccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttacc-----------------------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g29190.1 (Oryza sativa), 5'ss of exon 2
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc-tcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| ||||||||||| |||||||| ||||||||||||||||| || || |||   |||||||| ||||||||||| || |||||||||||||||||      | |    | |||   | ||   || |     | |   |       |   ||   ||    |     |     || |  |||||||    | ||  | ||                                              
AGATCATGGCCGTGCGCATCGTCAAGCACGCCATGGAGATCATCCACCTCCTCACCGACGCCAACCCCATTCAGGTCATCGTCGACGCCATCATCAACAGgtaaccccccctttcgcgcttcgctcgcccaatctctttcgaaccagtaaaattttaccg---ggatttgttagaacaccaca-cgagaattta----tctg-agaata---------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G078985_T01 (Zea mays), 5'ss of exon 2
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| || |||||| |||||||| |  ||||||||||||||||||| || |||   || |||||||||||  ||||||| ||||| |||||||||||   || || |  | | |||    |  ||     |         |   | || | |           ||   |  |||  ||   |   |     | |  || |||  ||                                         
AGGTCATGGCCGTCCGCATCATGAAGCACACCCTGGAGATCATCCACCTGCTCACTGACGCCAATCCCATCCAGGTGGTCGTGGACGCCATTATCAACAGgta--ctaccttgctctcctgt----cctcactcccgat-------ctctgtattgtcaggctaataacagctaaacttgttactttatgctgatactttttggaatgcggta----------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G156673_T02 (Zea mays), 5'ss of exon 1
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggt-tatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| || |||||| | |||||  |  ||||||||||||||||||| || ||    ||||||||||||||| |||| || || ||||||||||||||   | |      |   |  | | |   | |       |  |       | ||    |||   | | | |   | |  |  |  |||    | || |||                                                     
AGGTCATGGCTGTCCGCATCATCAAGCATACCCTGGAGATCATCCACCTGCTCACCGATGCCAACCCCATCCAGGTCGTCGTCGACGCGATCATCAACAGgtacagtcttaatctcggctaataaccgttaaacctactcgttac-tatatgttgattccatt--cagtatgctggatccccccctgaaccgtgtgtgtattt---------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G26840.2 (Glycine max), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggtt---atctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggagga--gaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| | ||||| ||  | ||  | ||||| || ||||||||||||||| |||| || |||| |||||| || |||||||| || |||||| ||||||| ||||| |||    | | ||  |||| |||   |   | |||  ||    |    ||| |         |  | |  |   | | | |   ||  ||||   |                                                          
AGCTCATGGCTGTCAGGATTATCAAGCATGCCATGGAGATCATCCACTTGCTCACTGACCTGAACCCAATTCAGGTCATTGTTGATGCCGTCATCAATAGgtatgttcgggtgttgagaacttcttttttt-tgtgttgatggatttgctttgggttttaattgcagatgagttgtttgtgctggtgtcatcaattgtaga---------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 4
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
           ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||  |      ||  |  | |        | |  ||||    |||    |  ||      |||||       |||| |||  || |  |    ||||     ||| || |||| || ||| |||| | ||||                     
-----------GTGCGCATCGTGAAGCACGCGTTCGACATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTGGTGGTGGATGCCATCATCAACAGgtgcg------cgtgctgtcgc-------cgtcatgggcacggagagaagtcat-----tatggg-------agagattggcacggaga----gggtg----ggggtggtgtgagggtcgagagcggcgaggg--------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtag-gttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|||||||||| | |||||| ||||||||||||||||||||||| ||| |||| || ||   ||| || |||||  |||||||||| |||||||||||||||||| | |||     | |  | ||| | | ||  ||    |      ||        ||     |                                                                                         
AGTTGATGGCTGGGCGCATTGTGAAGCACGCGATGGAGATCATTCACTTGCTCACAGATGCGAATCCGATCCAAATCATCGTGGACGCCATCATCAACAGgtagagctat-----agatctcttt-gttacaacttcattgatttttcgtccttcctgcttgcag-----------------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ18003 (Selaginella moellendorffii), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|| ||||||| |  ||||| |||||||| || ||||||||||| ||| |||| ||||||   ||||| |||||  | || || ||||| ||||||||||||||       || |          ||| | || |   ||  ||    ||    |       |      |  |                                                                                 
AGCTGATGGCTGGTCGCATTGTGAAGCATGCAATGGAGATCATTCACTTGCTCACGGACGCCAACCCGATCCAAATTATTGTCGATGCTATCATCAACAGgtatagaggttcaagtg-------agcaggat-tccaggacagttttggattttctctctttctctttgcag---------------------------------------------------------------------------------

upper sequence: PP1S114_143V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ37091 (Selaginella moellendorffii), 5'ss of exon 3
AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatctcgaacacttgtttagctgcatattggggggagaggcgggggatgggcgcatgggcgggaggagaggttgcaacaggaatttagggttatgcgggatgatgtggggctcgggagctgagaggtcgcggtgggaatgggtacag
|||||||||| |  ||||| |||||||| || ||||||||||| ||| |||| ||||||   ||||| |||||  | || || ||||| ||||||||||||||       || |          ||| | || |   ||  ||    ||    |       |      |  |                                                                                 
AGTTGATGGCTGGTCGCATTGTGAAGCATGCAATGGAGATCATTCACTTGCTCACGGACGCCAACCCGATCCAAATTATTGTCGATGCTATCATCAACAGgtatagaggttcaagtg-------agcaggat-tccaggacagttttggattttctctctttctctttgcag---------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100352574|gb|BY945340.1|BY945340
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162230619|gb|FC406042.1|FC406042
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162226150|gb|FC401610.1|FC401610
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67718339|gb|BJ968598.1|BJ968598
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|37826229|gb|BJ584241.1|BJ584241
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162273366|gb|FC449815.1|FC449815
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|37846959|gb|BJ604967.1|BJ604967
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162278768|gb|FC454878.1|FC454878
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162268851|gb|FC445998.1|FC445998
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162273367|gb|FC449816.1|FC449816
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162238753|gb|FC418245.1|FC418245
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67718322|gb|BJ968581.1|BJ968581
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|37842087|gb|BJ600095.1|BJ600095
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162226151|gb|FC401611.1|FC401611
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162235518|gb|FC411328.1|FC411328
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162278767|gb|FC454877.1|FC454877
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67721467|gb|BJ971726.1|BJ971726
EST:     CCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162238063|gb|FC414253.1|FC414253
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|7287019|gb|AW599506.1|AW599506
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162230618|gb|FC406041.1|FC406041
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|37843974|gb|BJ601982.1|BJ601982
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGATCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|162229438|gb|FC405824.1|FC405824
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|208367427|gb|DC951317.1|DC951317
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|37838796|gb|BJ596804.1|BJ596804
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67720579|gb|BJ970838.1|BJ970838
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
EST: gi|67720369|gb|BJ970628.1|BJ970628
EST:     CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAG                         TGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG
genomic: CTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 109

AGTTGATGGCGGTGCGCATCGTGAAGCACGCGATGGAGATCATCCACCTGCTGACGGACCAGAACCCCATCCAGGTCATCGTGGATGCCATCATCAACAGgtaggttatc ... atgggtacagTGGTCCTCGTGAAGACGCAACGCGTATCGGATCCGCTGGAGTGATCAGGAGGCAGGCCGTGGATATTTCTCCATTGAGGAGGGTGAACCAGGCGATCTAC




<











<


<