1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGGAGGGTGCTGCCAATGAGAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAGgtaacttagcatcctttgtgtaagcatttggagttcgtttagggtttatgtctgacgggcatgtgcgtactcatgcag
species | Physcomitrella patens |
transcript | PP1S110_112V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAGAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAG GAAAGGTTCTGCACAACCATACTGGTGATGTTGCAAGTGATCAGTTTCACAEST: gi|162151415|gb|FC326920.1|FC326920
genomic: TGAGAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAGgtaacttagc ... actcatgcagGAAAGGTTCTGCACAACCATACTGGTGATGTTGCAAGTGATCAGTTTCACA
EST: CTCATACTCCAG GAAAGGTTCTGCACAACCATACTGGTGATGTTGCAAGTGATCAGTTTCACAEST: gi|18328359|gb|BJ160363.1|BJ160363
genomic: CTCATACTCCAGgtaacttagc ... actcatgcagGAAAGGTTCTGCACAACCATACTGGTGATGTTGCAAGTGATCAGTTTCACA
EST: TGAGAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAG GAAAGGTTCTGCACAACCATACTGGTGATGTTGCAAGTGATCAGTTTCACAEST: gi|67568743|gb|BJ941567.1|BJ941567
genomic: TGAGAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAGgtaacttagc ... actcatgcagGAAAGGTTCTGCACAACCATACTGGTGATGTTGCAAGTGATCAGTTTCACA
EST: TGANAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAG GAAAGGTTCTGCACAACCATACTGGTGATGTTGCANGNGATCAGTTTCACA
genomic: TGAGAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAGgtaacttagc ... actcatgcagGAAAGGTTCTGCACAACCATACTGGTGATGTTGCAAGTGATCAGTTTCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAGGGTGCTGCCAATGAGAGTGGACGGGAGCCTAGCATTTGGGACACATTCTCTCATACTCCAGgtaacttagcatcctttgtgtaagcatttggagttcgtttagggtttatgtctgacgggcatgtgcgtactcatgcag
- - - - - - - - - - AGTGGA