1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGCCGCGGCCCGAAATACCTATCAGTGAAAATGAAATCCGTATTACTACGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatcactatcattccttaagattttagtagccctacgaatacattttctttggttcttgttaaactctcaatagatgatccaagcttcatattgt...
species | Physcomitrella patens |
transcript | PP1S10_152V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAG GATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAATEST: gi|67703113|gb|BJ963346.1|BJ963346
genomic: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatca ... gattgtgcagGATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAAT
EST: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAG GATAANGGAGCATCAGCGATTGTTCTGAAGEST: gi|100385367|gb|BY950959.1|BY950959
genomic: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatca ... gattgtgcagGATAAGGGAGCATCAGCGATTGTTCTGAAG
EST: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAG GATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAATEST: gi|100447055|gb|CJ971354.1|CJ971354
genomic: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatca ... gattgtgcagGATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAAT
EST: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAG GATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAATEST: gi|18356001|gb|BJ188060.1|BJ188060
genomic: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatca ... gattgtgcagGATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAAT
EST: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAG GATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAAT
genomic: CGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatca ... gattgtgcagGATAAGGGAGCATCAGCGATTGTTCTGAAGGCCATGGGCCGAGCTATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCCGCGGCCCGAAATACCTATCAGTGAAAATGAAATCCGTATTACTACGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatcactatcattccttaagattttagtagccctacgaatacattttctttggttcttgttaaactctcaatagatgatccaagcttcatattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA