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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGGACAGCCAAATCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccctgcttctctcaccttcaacagattcttgactgtccattcaaaatccagagtgttagaacgcctggatccccacgtctcacgcatactatg...

Basic information

species Physcomitrella patens
transcript PP1S106_16V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384946|gb|DC903453.1|DC903453
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|162272414|gb|FC449053.1|FC449053
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18330797|gb|BJ162803.1|BJ162803
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100433033|gb|BY978779.1|BY978779
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100442391|gb|BY981415.1|BY981415
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18327178|gb|BJ159180.1|BJ159180
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100443652|gb|BY963749.1|BY963749
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAGGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100376437|gb|BY986166.1|BY986166
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100389978|gb|BY989058.1|BY989058
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100423908|gb|BY976585.1|BY976585
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100388263|gb|BY951865.1|BY951865
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18374969|gb|BJ206547.1|BJ206547
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100398640|gb|BY990442.1|BY990442
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100385283|gb|BY950875.1|BY950875
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100358870|gb|BY946730.1|BY946730
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|208361729|gb|DC934969.1|DC934969
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100442905|gb|BY963400.1|BY963400
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100440203|gb|BY962116.1|BY962116
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100414968|gb|BY975102.1|BY975102
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100402552|gb|BY954892.1|BY954892
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|162264750|gb|FC440317.1|FC440317
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|208361815|gb|DC939037.1|DC939037
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18373891|gb|BJ205469.1|BJ205469
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100424612|gb|BY976727.1|BY976727
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100361536|gb|BY984055.1|BY984055
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100429739|gb|BY959714.1|BY959714
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAACTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100353592|gb|BY964884.1|BY964884
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100398916|gb|BY990580.1|BY990580
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|208363654|gb|DC935349.1|DC935349
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100386649|gb|BY970190.1|BY970190
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18346203|gb|BJ178246.1|BJ178246
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100396166|gb|BY972267.1|BY972267
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|67574343|gb|BJ947167.1|BJ947167
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100433798|gb|BY960712.1|BY960712
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|162266592|gb|FC441978.1|FC441978
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100422587|gb|BY976448.1|BY976448
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         C
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcag-
EST: gi|100422587|gb|BY976448.1|BY976448
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         C
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcag-
EST: gi|100422587|gb|BY976448.1|BY976448
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         C
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcag-
EST: gi|162274536|gb|FC450979.1|FC450979
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100441950|gb|BY981173.1|BY981173
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100351703|gb|BY964507.1|BY964507
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         NGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100359398|gb|BY984234.1|BY984234
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100378561|gb|BY968661.1|BY968661
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100388495|gb|BY952097.1|BY952097
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100422802|gb|BY958008.1|BY958008
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100436049|gb|BY979354.1|BY979354
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100446294|gb|CJ970593.1|CJ970593
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100445835|gb|CJ970134.1|CJ970134
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100361912|gb|BY947689.1|BY947689
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100452339|gb|CJ975221.1|CJ975221
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100445486|gb|CJ975635.1|CJ975635
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|208384825|gb|DC907438.1|DC907438
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTCTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100397747|gb|BY990380.1|BY990380
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100364728|gb|BY947878.1|BY947878
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100385568|gb|BY969905.1|BY969905
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|67573259|gb|BJ946083.1|BJ946083
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100426321|gb|BY958839.1|BY958839
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGTG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100401401|gb|BY990984.1|BY990984
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18359390|gb|BJ191451.1|BJ191451
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100362785|gb|BY947527.1|BY947527
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100452865|gb|CJ975482.1|CJ975482
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100366110|gb|BY967284.1|BY967284
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100441331|gb|BY962620.1|BY962620
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18374784|gb|BJ206362.1|BJ206362
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTTGGGTGTCTTTTTCGCTGCACACGAGTA
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATT-GGGTGTCTTTTTCGCTGCACACGAGTA
EST: gi|100452623|gb|CJ975362.1|CJ975362
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|18332361|gb|BJ164374.1|BJ164374
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
EST: gi|100396260|gb|BY972314.1|BY972314
EST:     TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCG                         GGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT
genomic: TCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 30

CTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGGACAGCCAAATCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccc ... gataaagcagGGAGGAGAGTCTAAGAAGATATTGGGTGTCTTTTTCGCTGCACACGAGTATGCGAAGAATCCTGAGTTTCTGGGATGTGTCGAAAACGCTTTGGGAATTC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTATCTAGGCAGCATGGACTTACTGGTGCCTCTGCAGCGGACAGCCAAATCCTTCAAAGGCATCTACAGTTCTCTCGATTCAGCTATAGCAGCGCAGCGgtaactgccctgcttctctcaccttcaacagattcttgactgtccattcaaaatccagagtgttagaacgcctggatccccacgtctcacgcatactatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT