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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatgtgaagaaatttcatttttcgtctactgcacccaacgtgaacttattggatggatgcaacacttaattgcagggtaatagatatagtgcag...

Basic information

species Physcomitrella patens
transcript PP1S101_67V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100354239|gb|BY945777.1|BY945777
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100371965|gb|BY967639.1|BY967639
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCAATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGGAGAA-GTG
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGG-AGAAAGTG
EST: gi|208350330|gb|DC906032.1|DC906032
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|208377704|gb|DC932240.1|DC932240
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCATAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100449045|gb|CJ973344.1|CJ973344
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|18358112|gb|BJ190171.1|BJ190171
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|208375758|gb|DC936698.1|DC936698
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100443377|gb|BY963673.1|BY963673
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100412936|gb|BY992508.1|BY992508
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100385898|gb|BY951092.1|BY951092
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100412296|gb|BY956511.1|BY956511
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|208387323|gb|DC933074.1|DC933074
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|162192491|gb|FC369121.1|FC369121
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|18342774|gb|BJ174810.1|BJ174810
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTANGANAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100379480|gb|BY986659.1|BY986659
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|162192001|gb|FC367214.1|FC367214
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|208361787|gb|DC935027.1|DC935027
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100412866|gb|BY992475.1|BY992475
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100351733|gb|BY964522.1|BY964522
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100435311|gb|BY979179.1|BY979179
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAGGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|162231058|gb|FC406169.1|FC406169
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100423654|gb|BY976496.1|BY976496
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100369386|gb|BY948074.1|BY948074
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100436738|gb|BY979501.1|BY979501
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|208397832|gb|DC912027.1|DC912027
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|18351199|gb|BJ183250.1|BJ183250
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100437309|gb|BY961456.1|BY961456
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
EST: gi|100365706|gb|BY948371.1|BY948371
EST:     GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAG                         GTTCGATGCCGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT
genomic: GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatg ... aaatcggcagGTTCGATGCTGTCATTCACTTTGCAGGCCTGAAGGCTGTAGGAGAAAGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGATCTTTGTAAGGTGGAAGACGTACTTAAGGTGTTCAAGCTTCACAGgtatgccatgtgaagaaatttcatttttcgtctactgcacccaacgtgaacttattggatggatgcaacacttaattgcagggtaatagatatagtgcag

- - - - - - - GGTGGA
- - - - - - - - TGGAAG
- - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - CAAGCT