1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGAAAAGTTTATGGACGTTTACCAGCAGCTGAAGAAGGAGATTCTGTCTGATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggcttcctaacctgtctttcggtgatctccatctatagtgtcttcacgatttttgatatgctacggctgtattttggtataaacgtctagtag...
species | Physcomitrella patens |
transcript | PP1S101_225V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100387744|gb|BY951744.1|BY951744
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100427422|gb|BY977489.1|BY977489
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|67508001|gb|BJ940875.1|BJ940875
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACNCGGAGGAGTCTCGTGCTTGGATTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100401204|gb|BY990883.1|BY990883
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100361028|gb|BY946877.1|BY946877
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|18368096|gb|BJ200181.1|BJ200181
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|162230234|gb|FC406590.1|FC406590
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100402689|gb|BY954960.1|BY954960
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100436231|gb|BY979445.1|BY979445
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100353340|gb|BY964757.1|BY964757
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|18358942|gb|BJ191001.1|BJ191001
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100443767|gb|BY963864.1|BY963864
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100427775|gb|BY977667.1|BY977667
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|208345511|gb|DC909201.1|DC909201
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAGEST: gi|100396655|gb|BY990233.1|BY990233
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
EST: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAG ATGCTGGACTATACTGTGCCTGGAG
genomic: ATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggc ... ttttgtgcagATGCTGGACTATACTGTGCCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAAGTTTATGGACGTTTACCAGCAGCTGAAGAAGGAGATTCTGTCTGATTCCGAGCTTGTCACATACACGGAGGAGTCTCGTGCTTGGGTTGAAGAGgtcacttggcttcctaacctgtctttcggtgatctccatctatagtgtcttcacgatttttgatatgctacggctgtattttggtataaacgtctagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA