1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGGTAATTTATTCTCCTTCCCGTTGTACTACGCAATCAGGGCCGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAAgtaagctcatcatgtctcatttcttcagtcagggcagacgctgttcttccaacactgtagaagaaatcgtcgctctggcttttagtgttttaaaactatgccgatgggtagtagactgacacatttcctgatttctcttcgtgcaactag
species | Physcomitrella patens |
transcript | PP1S101_162V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGGGCCGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAA ATGGGAGAATCCTTTGATGGGCTGGACATCAACAGGAGATCCTTACCAAAGEST: gi|37853413|gb|BJ611421.1|BJ611421
genomic: TCAGGGCCGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAAgtaagctcat ... gtgcaactagATGGGAGAATCCTTTGATGGGCTGGACATCAACAGGAGATCCTTACCAAAG
EST: TCAGGGCCGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAA ATGGGAGAATCCTTTGATGGGCTGGACATCAACAGGAGATCCTTACCAAAGEST: gi|7067327|gb|AW497182.1|AW497182
genomic: TCAGGGCCGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAAgtaagctcat ... gtgcaactagATGGGAGAATCCTTTGATGGGCTGGACATCAACAGGAGATCCTTACCAAAG
EST: CGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAA ATGGGAGAATCCTTTGATGGGCTGGACATCAACAGGAGATCCTTACCAAAG
genomic: CGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAAgtaagctcat ... gtgcaactagATGGGAGAATCCTTTGATGGGCTGGACATCAACAGGAGATCCTTACCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTAATTTATTCTCCTTCCCGTTGTACTACGCAATCAGGGCCGGCAACGGACAAATGGAAAATCAGCTTCGAATCTGTTAACAAgtaagctcatcatgtctcatttcttcagtcagggcagacgctgttcttccaacactgtagaagaaatcgtcgctctggcttttagtgttttaaaactatgccgatgggtagtagactgacacatttcctgatttctcttcgtgcaactag
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