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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgtttttatttcttcttgtgattctcctcctgtttttccgctccaacttgtgatattttgcgcttgatccaccgcgccgattgaaaaacattgccagtaggcgcacaaaacgtgtggcctgacaaaagttctcttttgcag

Basic information

species Physcomitrella patens
transcript PP1S9_317V6.2
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827954|gb|BJ585966.1|BJ585966
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37839102|gb|BJ597110.1|BJ597110
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37829800|gb|BJ587812.1|BJ587812
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162242962|gb|FC416471.1|FC416471
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|208350253|gb|DC925729.1|DC925729
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|18340695|gb|BJ172725.1|BJ172725
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37824608|gb|BJ582674.1|BJ582674
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162160170|gb|FC337067.1|FC337067
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|15730020|gb|BI741619.1|BI741619
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162178384|gb|FC355206.1|FC355206
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37829477|gb|BJ587489.1|BJ587489
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37829305|gb|BJ587317.1|BJ587317
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37841967|gb|BJ599975.1|BJ599975
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37841095|gb|BJ599103.1|BJ599103
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162219674|gb|FC395878.1|FC395878
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|18337924|gb|BJ169948.1|BJ169948
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|15327252|gb|BI487832.1|BI487832
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37827427|gb|BJ585439.1|BJ585439
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162252661|gb|FC428698.1|FC428698
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|18334134|gb|BJ166150.1|BJ166150
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162197253|gb|FC372540.1|FC372540
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37825373|gb|BJ583439.1|BJ583439
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|18336149|gb|BJ168171.1|BJ168171
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162197252|gb|FC372539.1|FC372539
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37828150|gb|BJ586162.1|BJ586162
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|37851908|gb|BJ609916.1|BJ609916
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
EST: gi|162174854|gb|FC351646.1|FC351646
EST:     CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAG                         GGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC
genomic: CTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgttt ... tcttttgcagGGTCACTTTTTAGAAAGACTCCAGAACAAGCTGGATTGGTATTCCAGAGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTTGAAAGCAAAGGGCAAGGCCGTGCAATACGTTGTCTATGACGACGAGgtactcgtttttatttcttcttgtgattctcctcctgtttttccgctccaacttgtgatattttgcgcttgatccaccgcgccgattgaaaaacattgccagtaggcgcacaaaacgtgtggcctgacaaaagttctcttttgcag

- - -  AAGCAA
- - - -  GCAAAG