1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
ATCTTGAACCACCCTGAGGAGTCAATGGCAATGGAGCTAGATGTTGGAGCTTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctattcggaactttgtctgagttaatgatgcacttgtccacaaataatgtgtagaagttttatttgaggagaccttcagatctggtagctactggcatcacaggtataatttcctggcttttaaaacttgctgtttatatgctgcag
species | Physcomitrella patens |
transcript | PP1S495_6V6.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAA AATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTGEST: gi|162239004|gb|FC416182.1|FC416182
genomic: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctatt ... tatgctgcagAATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
EST: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAA AATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTGEST: gi|37828639|gb|BJ586651.1|BJ586651
genomic: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctatt ... tatgctgcagAATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
EST: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAA AATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTGEST: gi|37830400|gb|BJ588412.1|BJ588412
genomic: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctatt ... tatgctgcagAATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
EST: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAA AATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTGEST: gi|37850207|gb|BJ608215.1|BJ608215
genomic: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctatt ... tatgctgcagAATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
EST: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAA AATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTGEST: gi|162239003|gb|FC416181.1|FC416181
genomic: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctatt ... tatgctgcagAATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
EST: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAA AATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTGEST: gi|162160375|gb|FC337376.1|FC337376
genomic: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctatt ... tatgctgcagAATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
EST: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAA AATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
genomic: TTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctatt ... tatgctgcagAATACCGACTTCTAGCGTTTGTGAGTCACATGGGGACCTCAACACAAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTGAACCACCCTGAGGAGTCAATGGCAATGGAGCTAGATGTTGGAGCTTGCACTCAAGATACTCAAGCAGAGGTCAAATATCCAGATGGTTCAGGAAgtacgctattcggaactttgtctgagttaatgatgcacttgtccacaaataatgtgtagaagttttatttgaggagaccttcagatctggtagctactggcatcacaggtataatttcctggcttttaaaacttgctgtttatatgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG