1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttctcatatctctgaattggttgaaatggttttggttagatttattatatgtttgatttagttgaatgctgtctaatattttttgtgtgcaccgtgtag
species | Physcomitrella patens |
transcript | PP1S400_36V6.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGGAAACANGCAAAAAACAA GNGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|37843737|gb|BJ601745.1|BJ601745
genomic: GAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|208362840|gb|DC950640.1|DC950640
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|162185105|gb|FC362239.1|FC362239
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|18341395|gb|BJ173430.1|BJ173430
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCGTGGCACCAAGTCTGTTACTEST: gi|67692629|gb|BJ952862.1|BJ952862
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|162162677|gb|FC338979.1|FC338979
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|37836488|gb|BJ594496.1|BJ594496
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|37841576|gb|BJ599584.1|BJ599584
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACTEST: gi|37849444|gb|BJ607452.1|BJ607452
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
EST: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAA GTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
genomic: AATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttct ... caccgtgtagGTGAACATCCGTACGCGAGATAATGTTGTGCATGGCACCAAGTCTGTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCGAGAAGCTCAGTTGGCGCAATTTAACTACATTCTTGTCGTTGGCGAAGAGGAAACAAGCAAAAAACAAgttggtttctcatatctctgaattggttgaaatggttttggttagatttattatatgtttgatttagttgaatgctgtctaatattttttgtgtgcaccgtgtag
- - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA