1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTCCGATCCGCTTCTTCTGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtattttcagatctccaattttttgttatttctgaaagccgctggttttttaactgttgattctcgttccatcctgtactgaggaagctcttccagtcgtgttggacattactctctcctctcgcttttttcaatcatcgtttcatgcag
species | Physcomitrella patens |
transcript | PP1S31_225V6.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAG GTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATGEST: gi|162183354|gb|FC359269.1|FC359269
genomic: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtatt ... tttcatgcagGTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATG
EST: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAG GTATTGAGTGCTGGAACTGAACTAGTCEST: gi|162183353|gb|FC359268.1|FC359268
genomic: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtatt ... tttcatgcagGTATTGAGTGCTGGAACTGAACTAGTC
EST: GGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAG GTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATGEST: gi|162216626|gb|FC393537.1|FC393537
genomic: GGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtatt ... tttcatgcagGTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATG
EST: GGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAG GTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATGEST: gi|162150711|gb|FC327607.1|FC327607
genomic: GGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtatt ... tttcatgcagGTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATG
EST: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAG GTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATGEST: gi|162161916|gb|FC338499.1|FC338499
genomic: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtatt ... tttcatgcagGTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATG
EST: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAG GTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATG
genomic: TGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtatt ... tttcatgcagGTATTGAGTGCTGGAACTGAACTAGTCACCGAGCAAACTGCCGCGCGTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGATCCGCTTCTTCTGGGTCCTAACAATCAGTATCTCTCCAAGATCATCTCCGTTTTTGCTGAGgtatagtattttcagatctccaattttttgttatttctgaaagccgctggttttttaactgttgattctcgttccatcctgtactgaggaagctcttccagtcgtgttggacattactctctcctctcgcttttttcaatcatcgtttcatgcag
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