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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTCCTTTTGGGGGAACGAAGCAATCTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattcttggaatcagccattccttcttaaaccatgctatttcccaggtgacaaggccgcttgttaagatgtgcagaaatgtatgaagacacatcaca...

Basic information

species Physcomitrella patens
transcript PP1S279_72V6.2
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18335538|gb|BJ167558.1|BJ167558
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162167719|gb|FC344033.1|FC344033
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162175881|gb|FC351559.1|FC351559
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|18340742|gb|BJ172773.1|BJ172773
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162257980|gb|FC433866.1|FC433866
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162188380|gb|FC364250.1|FC364250
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37849844|gb|BJ607852.1|BJ607852
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162202023|gb|FC377229.1|FC377229
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|67695860|gb|BJ956093.1|BJ956093
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37848440|gb|BJ606448.1|BJ606448
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37846799|gb|BJ604807.1|BJ604807
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162175611|gb|FC351003.1|FC351003
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37842855|gb|BJ600863.1|BJ600863
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37847436|gb|BJ605444.1|BJ605444
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37849138|gb|BJ607146.1|BJ607146
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37838258|gb|BJ596266.1|BJ596266
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|208345206|gb|DC925476.1|DC925476
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37851842|gb|BJ609850.1|BJ609850
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162167720|gb|FC344034.1|FC344034
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37842399|gb|BJ600407.1|BJ600407
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162175090|gb|FC351158.1|FC351158
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162170328|gb|FC346525.1|FC346525
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37841695|gb|BJ599703.1|BJ599703
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|162261210|gb|FC437227.1|FC437227
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|208365822|gb|DC951057.1|DC951057
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC
EST: gi|37851044|gb|BJ609052.1|BJ609052
EST:     CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAG                         CTGAAATACTTGTGCCTGGGCAACATCAAGCAACCNTTCATGTGCTGAACC
genomic: CTGGACTAGGTCGTGAAGGTTCCAACTACGGAATTGATGAGTATCTTGAGgtacattctt ... ttggatgcagCTGAAATACTTGTGCCTGGGCAACATCAAGCAACCCTTCATGTGCTGAACC