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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTTGGGTCTCGTCGTGGTGCAAGTGACATCAAGAACCATCCATTCTTTCAAGACATCAATTGGCCTCTTATACGCAACATGgtatgtgcaagtttctaatgcttccttacagatctcgtgtcattactctcataatttgcttgaatacgaagtgcgtgcggtagtaaacatttgcttcgct...

Basic information

species Physcomitrella patens
transcript PP1S17_314V6.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S17_314V6.1 (Physcomitrella patens), 5'ss of exon 19
lower sequence: LOC_Os04g23890.1 (Oryza sativa), 5'ss of exon 21
----------------AGACTTGGGTCTCGTCGTGGTGCAAGTGACATCAAGAACCATCCATTCTTTCAAGACATCAATTGGCCTCTTATACGCAACATGgtatgtgcaagtttctaatgcttccttacagatctcgtgtcattactctcataatttgcttgaatacgaagtgcgtgcggtagtaaacatttgcttcgct
                 |  | || ||   |  |||||||| |||||||||| | ||| | || |||||||||||||||||||| || |||||   |||||||  |  ||  ||   | || ||   |||  | |||       ||    ||| |||| ||        | ||  |     | |||  || ||    |  
GAGAGATCCTTCAAATCGTATAGGTTCAAATGCTGGTGCAAATGACATCAAGCAACATTCCTTTTTTCAAGACATCAATTGGCCACTCATACGTTGCATGgtactttgaatgtttcga-gcatcaagaca--tttcg-------acaaagatagtttgtttagtgcatcactgattatctaaataactatatgtgcag--

upper sequence: PP1S17_314V6.1 (Physcomitrella patens), 5'ss of exon 19
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 23
---------------AGACTTGGGTCTCGTCG-TGGTGCAAGTGACATCAAGAACCATCCATTCTTTCAAGACATCAATTGGCCTCTTATACGCAACATGgtatgtgcaagtttctaatgcttccttacagatctcgtgtcattactctcataatttgcttgaatacgaagtgcgtgcggtagtaaacatttgcttcgct-----
                    | |||     |  |||||| | ||| |||||| | ||||| || || |  |  ||||||||||||||||| ||||||||||||     |  ||  |     ||| ||  |  ||     | |  |   |  | | |  | | | ||  ||       |  |   | | |  |   ||  |     
AAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgta-----atattcttgtgatttcttttgaagtcagtcattagaaaaatattgactaccgtaagtaataaaattagtccttcaaagatacgtcagtcattttagg

upper sequence: PP1S17_314V6.1 (Physcomitrella patens), 5'ss of exon 19
lower sequence: GLYMA08G33520.1 (Glycine max), 5'ss of exon 4
---------------AGACTTGGGTCTCGTCG-TGGTGCAAGTGACATCAAGAACCATCCATTCTTTCAAGACATCAATTGGCCTCTTATACGCAACATGgtatgtgcaagtttctaatgcttccttacagatctcgtg-tcattactctcataatttgcttgaatacgaagtgcgtgcggtagtaaacatttgcttcgct-----
                    | |||     |  |||||| | ||| |||||  | ||||| || ||||  |  ||||||||||||||||| ||||||||||||      |  ||||  || || |||    |    ||| | || |   |  | | |  | | ||||  ||       |  |   | | |  |   ||| |     
AAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAACAGCATCCTTTTTTTCGTGGAATCAATTGGCCTCTTATCCGCAACATGgta------atattcttgtgatttcttttgaagtcagtgattataaaaatattgactatcgtaaataataaaattagcctttcaaagatacatcagtcgttttagg