1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GGACTTTGGTGAATTGTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaattatacttcagcacaatttgtgaagtggttttgtttgttttctgctacttatctggttgcttccagtaatattctttatcttgcatcagtaaatatatcaagacaatcctgtttaacagttggtgaacttctccag
species | Physcomitrella patens |
transcript | PP1S88_42V6.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAG GTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCGEST: gi|162247006|gb|FC423948.1|FC423948
genomic: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaatta ... acttctccagGTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCG
EST: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTCCCTGGGT-AGGCA-G GTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCEST: gi|162247005|gb|FC423947.1|FC423947
genomic: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaatta ... acttctccagGTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGC
EST: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAG GTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCGEST: gi|67692592|gb|BJ952825.1|BJ952825
genomic: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaatta ... acttctccagGTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCG
EST: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAG GTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCGEST: gi|67569333|gb|BJ942157.1|BJ942157
genomic: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaatta ... acttctccagGTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCG
EST: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAG GTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCGEST: gi|162232204|gb|FC407754.1|FC407754
genomic: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaatta ... acttctccagGTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCG
EST: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAG GTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCGEST: gi|162190373|gb|FC365387.1|FC365387
genomic: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaatta ... acttctccagGTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCG
EST: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAG GTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCG
genomic: GTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaatta ... acttctccagGTCTTCCTTGAGTATTCAGATATTGCCGGTGCTTCGAAAGCGAAGGCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTTGGTGAATTGTGTTATTCCGAGACCTAGAAGTGGTGAAAATGTTCCTGGGTTAGGCAAGgtaaaaattatacttcagcacaatttgtgaagtggttttgtttgttttctgctacttatctggttgcttccagtaatattctttatcttgcatcagtaaatatatcaagacaatcctgtttaacagttggtgaacttctccag
- - - - - - - - - - - - - - - - AGAAGT