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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGTTCAGTGGGCGCTACGATTCGTCTGTACATTGAGCAATACGAAGCTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagtttttacgctctcatcccttttcgaaatgttttctttagatatatttctagctgcccatccgttgaagacaaagtctagcgagtcttttatatgacggaatttctatattctggtgaaaatggcaatcagctgaaaattccaccttttaataccattttaatatgattgcag

Basic information

species Physcomitrella patens
transcript PP1S4_12V6.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37851638|gb|BJ609646.1|BJ609646
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|162175774|gb|FC352076.1|FC352076
EST:     CTGATCCTGCCAAGATATTTGAACCCTCTGCCGAGGCGTTGGCACCTTTT                         GTGGAGGTAGCTTTAAAGCTTTTGAAAATGGAGGAGTTCACAGGCCGCTTG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|67692041|gb|BJ952274.1|BJ952274
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|162178505|gb|FC354957.1|FC354957
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|162276462|gb|FC452465.1|FC452465
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|162263231|gb|FC439052.1|FC439052
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|162231044|gb|FC406155.1|FC406155
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|162180376|gb|FC355797.1|FC355797
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
EST: gi|162263230|gb|FC439051.1|FC439051
EST:     CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTT                         GTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG
genomic: CTGATCCTGCCAAGATATTCGAACCCTCTGCCGAGGCGTTGGCACCTCTTgtaagttttt ... atgattgcagGTGGAGGTAGCTTTAAAGCTTTCGAAAATGGAGGAGTTCACAGGCCGCTCG