Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCGGTGCACTTAGATTCTCAACCGTTCGATGTAGAACGTGATTTGACAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgtactacctgtgtaatcttttacattttggggtttgttctattggacatagcgcatcaatgtgctgagattgagattgtaagagagttgagt...

Basic information

species Physcomitrella patens
transcript PP1S47_161V6.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162149872|gb|FC326195.1|FC326195
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162174483|gb|FC350762.1|FC350762
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162269048|gb|FC445540.1|FC445540
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTTTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162196991|gb|FC375216.1|FC375216
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162150281|gb|FC326366.1|FC326366
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|13250964|gb|BG361867.1|BG361867
EST:     CAACTCCTTCATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162269049|gb|FC445541.1|FC445541
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162167247|gb|FC342812.1|FC342812
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162194188|gb|FC371039.1|FC371039
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162177647|gb|FC353233.1|FC353233
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162177648|gb|FC353234.1|FC353234
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|162151929|gb|FC328890.1|FC328890
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
EST: gi|67692540|gb|BJ952773.1|BJ952773
EST:     CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAG                         AAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA
genomic: CAACTCCTACATTTAAACTTAAACGACCGCAACTCTTAAAATACTATCAGgtacttgtgt ... gattttgcagAAGGAGATTGACGTTATGTATAACAAGATAAAATCGAACTCCTGAAGGTTA