1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
ATCTGGACAAGTACTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAAgtaagtttttatggacaaatcagtgtaactcaatgagccccaaaagacgcaattaagctatgacacttagaaacaaatgaaagacacctcatgaattgtt...
species | Physcomitrella patens |
transcript | PP1S414_24V6.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAA GTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATGEST: gi|37843086|gb|BJ601094.1|BJ601094
genomic: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAAgtaagttttt ... aaggctgcagGTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATG
EST: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAA GTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATGEST: gi|37840559|gb|BJ598567.1|BJ598567
genomic: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAAgtaagttttt ... aaggctgcagGTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATG
EST: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGTTTTTCAAAA GTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATGEST: gi|67698398|gb|BJ958631.1|BJ958631
genomic: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAAgtaagttttt ... aaggctgcagGTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATG
EST: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAA GTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATGEST: gi|208397007|gb|DC924685.1|DC924685
genomic: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAAgtaagttttt ... aaggctgcagGTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATG
EST: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAA GTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATG
genomic: CTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAAgtaagttttt ... aaggctgcagGTTGAATGGAAGGCGCTAGACGAAATCAATGCAGGAGTCTGCGATGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGGACAAGTACTTTGAGAAGGACAGGTATCACTGCAAGGCACATCGATTGGTTTTCAAAAgtaagtttttatggacaaatcagtgtaactcaatgagccccaaaagacgcaattaagctatgacacttagaaacaaatgaaagacacctcatgaattgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa