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GGGATTTCGTTGCGTTTTCCAAGGTTGATGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAGgtgtggacacgcgctgtaattatagaaacagaaaaattctgtctgctgtatgctgtcactcaagataaacgaatttataccgttgaatcttgctagaagt...
species | Physcomitrella patens |
transcript | PP1S223_54V6.2 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAG GTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGACEST: gi|37844774|gb|BJ602782.1|BJ602782
genomic: TGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAGgtgtggacac ... tgtaatgcagGTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGAC
EST: GAAGCGACTTCAGCACAGCAG GTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGACEST: gi|37852476|gb|BJ610484.1|BJ610484
genomic: GAAGCGACTTCAGCACAGCAGgtgtggacac ... tgtaatgcagGTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGAC
EST: TGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAG GTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGACEST: gi|162247433|gb|FC424999.1|FC424999
genomic: TGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAGgtgtggacac ... tgtaatgcagGTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGAC
EST: TGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAG GTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGACEST: gi|37838903|gb|BJ596911.1|BJ596911
genomic: TGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAGgtgtggacac ... tgtaatgcagGTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGAC
EST: TGAGATTACGGGAAGATAAAACGCCTGTNGAAGCGACTTCAGCACAGCAG GTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGAC
genomic: TGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAGgtgtggacac ... tgtaatgcagGTCGCAGAAATGTATCGAGCTCAGAAGATCAACCATGGCCATGGTGGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATTTCGTTGCGTTTTCCAAGGTTGATGAGATTACGGGAAGATAAAACGCCTGTTGAAGCGACTTCAGCACAGCAGgtgtggacacgcgctgtaattatagaaacagaaaaattctgtctgctgtatgctgtcactcaagataaacgaatttataccgttgaatcttgctagaagt
- - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataaa